similar to: gridBase Base Plot Positioning

Dear All, I ma having a trouble in generating a figure containing 3 insets with the gridBase package. I always get an error message of the kind: Error in gridPLT() : Figure region too small and/or viewport too large No matter which parameters I choose. The plots works nicely with two insets only, but when I try adding the third one, my troubles begin. I am probably doing something wrong in the

Hello all, I'm trying to write a function using the gridBase package. I'd like to push several base subplots to a larger plot constructed with grid. However, I'm having trouble getting consistent results when running the function when the plotting window (quartz) is closed, when it is left open and the plot function is repeated to the same window, and when the output is saved to a

I would like to use gridBase to place four separate heatmaps (actually, a stripped-down heatmap.2 from ght gregmisc package that contains only the "image" part) into four different viewports. I can get the placement correct, but I keep 'losing' the previous plot. Any suggestions? Here is some quick example code trying to put a heatmap into the left viewport and then

Hi everyone. I want to solve the following problem. I have a data.frame and I create a dotplot using lattice. Then I want to use the grid-package to create a combined graphic which contains the dotplot as well as a textplot() (using package gplots) of the data.frame next to the dotplot. Example code: library(lattice) library(grid) library(gplots) xx <- data.frame(f=factor(rep(1:5, each=5)),

I am setting up base plots -- one in viewport A and and one in B. This part works fine. But if I go back to A after having done B and add horizontal lines it seems to not use the correct coordinates. How do I tell it to resume using A's coordinates? I am already using par(fig = gridFIG()) but it seems that that's not enough to reestablish them. What happens is that when I go back to

I am setting up base plots -- one in viewport A and and one in B. This part works fine. But if I go back to A after having done B and add horizontal lines it seems to not use the correct coordinates. How do I tell it to resume using A's coordinates? I am already using par(fig = gridFIG()) but it seems that that's not enough to reestablish them. What happens is that when I go back to

All, I have a simple plot(x,y) and I would like to then insert rectangles of some length (in native coordinates) and height fixed to 0.5 in native coordinates. I can't quite get the code right to do this. Can anyone give me a quick example of how to do this? I looked the gridBase index and the tutorial (from R-news?) but just haven't gotten it down yet. > plot(1:10,1:10)

Dear list, I have produced a fairly intricate plot arrangement for use in a publication using layout() and gridBase, and out of curiosity I'd like to learn whether a more elegant and robust solution could be obtained with grid to avoid the layout() function. > library(gridBase) > x <- seq(-pi, pi, length=10) > y <- cos(x) > > par(mar = c(0, 0, 0, 0), pty =

Hi, Why does the upper left panel (in the plot below) not have a gray background? Cheers, Marius require(grid) require(gridBase) pdf(file="Rplot.pdf", width=8, height=8, onefile=FALSE) ## set up the grid layout gl <- grid.layout(5, 5, widths=unit(c(1.8, 8, 0.8, 8, 0.8), "cm"), heights=unit(c(0.8, 8, 0.8, 8, 1.5), "cm")) if(FALSE) grid.show.layout(gl)

Hi all -- So I'm trying to use lattice graphics, but I want to use a sunflower plot, which doesn't seem to be part of lattice. No problem, I put together the following code, which mostly works -- *except* for the first graph it generates. If it opens the graphic device, then it draws the xygrid, clears the device, then draws the sunflowerplot. All subsequent output operations work

I need to make a fairly complex animated graphic and decided to use grid for it. A very simple example of what I need: ##============================================================================== library(grid) grid.newpage() pushViewport(plotViewport()) pushViewport(viewport(xscale = extendrange(c(0, 100)), yscale = extendrange(c(0, 100)))) grid.xaxis() grid.yaxis()

I am attempting to generate a series of plots with cubic B-Splines and the code I am using is generating the following error message that I have been unable to resolve. Error in grid.Call.graphics("L_xspline", x$x, x$y, x$shape, x$open, x$arrow, : add_point - reached MAXNUMPTS (25200) This is the code that generates this error. plot.results <- function(dfn) { dt <-

Hi, I am having trouble plotting a series of dendrograms using lattice and grid code as found in Paul Murrells book R Graphics. This is the error message I recieve: Error in downViewport.vpPath(vpPathDirect(name), strict, recording = recording) : Viewport 'plot1.panel.1.1.off.vp' was not found I have attached the code and also my data file. Should anyone have any suggestions then

Dear all, I have a simple plot using "gridBase" like this. The problem occurs whenever I execute this code there is always a blank page created before the actual plot. How can we disable that blank page? I am using: R version 2.7.2 (2008-08-25) and gridBase version: 0.4-3 __ BEGIN__ library(grid) library(gridBase) opar <- par(no.readonly=TRUE) par(opar) grid.newpage()

Dear list, Can someone explain why the childNames below gives character(0) instead of the (canonical) names of the children grobs of the xaxis gTree ? [1] "major" "ticks" "labels" Many thanks in advance, Tobias ### minimal example code ### library(grid) pushViewport(plotViewport(c(5,4,4,2))) pushViewport(dataViewport(1:5, 1:5)) grid.points(1:5, 1:5)

Dear grid-expeRts, The goal: I would like to construct a plot (matrix) with grid and gridBase, which consists of four "sub-plots". The sub-plots should have a square plotting region as one would force with par(pty="s") in base graphics. The problem: I don't get a square plotting region, not even by specifying pty="s" in par(). Indeed, if you display the grid

Dear all, Below is some code where I try to get plotmath symbols in an rgl plot. Duncan Murdoch kindly suggested to use a "sprite" for this. As you can see, on can get it to work, but my knowledge about grid and rgl is too limited to perfectly solve the problem. 1) As you can see (please rotate the plot a little bit so that (0,0,0) is "in front"), the quality of the .png

Hello all, I'm trying to write a function that produces a main plotting region with several square plots along the right side. Ideally the size of right side plots will scale only with the height of the entire plot, yet never overlap with another secondary plot. The following two snippets get close, however, as I resize the plot horizontally the right side plots (green squares) get smaller

Hello, I've got a DESCRIPTION file with a the first line: Package: Repitools But, when I run R CMD INSTALL Repitools I get: * installing *source* package Repitools ... ** R ** data ** inst ** preparing package for lazy loading Warning in FUN(X[[1L]], ...) : Created a package name, "2011-04-20 09:05:40", when none found ** help *** installing help indices ** building package

I have a confusing error from R CMD check that I don't get when running the example manually by hand. In the \examples section of an Rd file, I create a GRanges object, then I call a function with the GRanges object, whose first 2 lines are require(GenomicRanges) annoDF <- as.data.frame(anno) # anno is the GRanges object. and that second line gives: Error in