similar to: Reading a TIFF file

Hi, We have recently been using the tiff package for reading tiff images into the Bioconductor Package EBImage. This has been extremely helpful in conjunction with other steps to eliminate dependencies on ImageMagick. However, it seems that 12-bit images are not supported. We were wondering if there are plans to extend the functionality of the readTIFF() function in the tiff package to

I wanted to ask Eric a question or two about the rtiff package, but his listed email address bounces w/ 550 error. Does anyone know how to reach him, or whether he's actively maintaining rtiff? If anyone's interested, my primary desire is for rtiff (or other tool) to provide me with the raw range of pixel values in a tiff file. rtiff dumps straight into a pixmap object, so the

Many medical journals and publishers require that images, whether photographs or line art, be submitted as high resolution .TIFF images. One option for R users is to produce an image in one format and to convert it to a .TIFF file using a second software program. My experience has been that this option often results in images of poorer quality, often with blurry contours, and a loss of

Hi all, I'm trying to log chart but with natural looking tick marks. My specifications are very specific -- it must indicate the lowest number's tick as well as the maximum. I've attached sample code and data for a particular case (and there are a few more like this) where the bottom tickmarks on the chart are not set to where I want them to be and yet they fit in the ylim range.

Hello every body, i?m testing some w32 apps with wine and I found some problems. Trying to install ArcGIS (My first installation), I had the following error: Need internet explorer 6. Well I installed IE 6, and continue installing ArcGIS, it was installed succesfully, but it installed Phyton, and throw some problems. Well finally installed I run ArcGIS and the fonts were crazy, I didnt see

On R 2.15.2 and ArcGIS 9.3.1, it works for me in ArcCatalog but you have to follow the particulars here: http://webhelp.esri.com/arcgisdesktop/9.3/index.cfm?TopicName=Accessing_delimited_text_file_data For example: write.table(test, '***.tab', sep = '\t', row.names = F) The extension .tab and sep = '\t' are required for text files. Didn't test row.names=T but I

It seems within the last ~3 months Ive been having issues with writing text or csv files from a R data frame.  The problem is multifold and it is hard to filter  out what is going on and where the problem is.  So, Im hoping someone else has come across this and may provide insight.   My current settings for R: R version 2.15.2 (2012-10-26) Platform: x86_64-w64-mingw32/x64 (64-bit) locale: [1]

Dear members, How can I read and plot an ArcGIS raster file into R ? The file has extension .aux and contains floating point bathymetry data. The purpose is to create a spatial model in R that uses ArcGIS map data. I have managed to read and plot various shape files into my R project, but I am stuck with this now. I am new to this list and also to R, so any help would be much appreciated. Many

Hi everyone, I wonder if anyone knows the reason why the outputs of the same reprojection in r and arcgis are different?. The magnitude of the change can be up to 40 km in the poles. Basically, I have a database of points equally separated by one degree over the globe. In ARCGIS, I am projecting the data in GCS-WGS-1984 and then reprojected it to Berhmann to ensure equal area

Can anyone tell me why I would get different average nearest neighbor values for the same set of coordinates between ArcGIS 10 and R? Sometimes the difference in distance is over 1.3 km. Alexis -- View this message in context: http://r.789695.n4.nabble.com/nndist-R-vs-ArcGIS-tp3442375p3442375.html Sent from the R help mailing list archive at Nabble.com.

Hi everybody, I heard about "R(D)-COM Stat connector" for ArcGIS, but i am not sure what that is. I did a search in the archive but it seems i am not getting anything back. can anybody explain me what that is, and where i can find more info about it? There is any possibility to run R from inside ArcGIS? there is more than RArcInfo and Shapefile which can

I have a Samba 3.4.7 PDC set up (Ubuntu 10.10/OpenLDAP) and have configured a Windows 7 Pro 64 bit workstation as a domain member. Logins and shares work without a hitch. I'm running into a problem with ArcGIS 10 Server on Windows using domain accounts for the services. ArcGIS post-install fails because it won't take the username/password combination of the domain account. I initially

Dear R-help I want to display an image file in a new plot frame. SVG is my preferred format, but I can also consider PNG, GIF, JPEG, TIFF, and PPM (from ImageMagick). By way of background (although not material to this posting), the image file is generated by a call to 'dot' (part of the 'Graphviz' suite) after the required .dot file has been produced using hand-crafted R code.

Can someone help me out with a "small" problem? I've started using netcdf files recently, and I want to extract the grid id and also the coordinates from a HIRHAM netcdf file. I know how to extract a slice of dataset both in space and in time and I also know the area that this file should cover, however I have no idea regarding the reference for both LAT/LON and RLAT/RLON. I tried

I am wondering if there is a function which will do a join between 2 data.frames by minimum distance, as it is done in ArcGIS for example. For people who are not familiar with ArcGIS here it is an explanation: Suppose you have a data.frame with x, y, coordinates called track, and a second data frame with different x, y coordinates and some other attributes called classif. The track data.frame has

Hi, Can someone please offer a procedure for going from CIs produced by intervals.lme() to fixed-effects response CIs. Here's a simple example: library(mlmRev) library(nlme) hsb.lme <- lme(mAch ~ minrty * sector, random = ~ 1 | cses, Hsb82) (intervals(hsb.lme)) (hsb.new <- data.frame minrty = rep(c('No', 'Yes'), 2), sector = rep(c('Public',

In the course of exploring response prediction, I stumbled upon a small discrepancy between the CIs produced by predict.lm() and all.effects() require(mlmRev) require(effects) hsb.lm <- lm(mAch ~ minrty * sector, Hsb82) hsb.new <- data.frame( minrty = rep(c('No', 'Yes'), 2), sector = rep(c('Public', 'Catholic'), each = 2)) hsb.eff <-

Hello all, i am using Ubuntu 12.04 and I have R 2.14.1 When i try to install the rtiff package I got this error: > install.packages("rtiff") Installing package(s) into ?/home/lapalmejo/R/i686-pc-linux-gnu-library/2.14? (as ?lib? is unspecified) --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done trying URL

Hi, ? I am trying to write a shapefile with projection. I have my data in a data.frame called try and consists in xy coordinates and a numerical attribute value z1. ? Libraries loaded are: sp, rgdal, raster, maptools ? head(try) ???????? x?????? ??? y??? ? ? ? ? ? ? ??? z1 1 610237.1 ???????? 3375751 ???????????? 8.221 2 610236.1 ???????? 3375750 ???????????? 8.153 3 610236.1 ????????

Hi, I am trying to predict the habitat suitability of lobster with GAMs. I need to produce a map in ArcGis of the predicted densities. I did some search and the function predict.gam seems to do the job. Is this the right way to do it? when you apply the function you get the predicted values (different from your input data points) but I do not understand what is the procedure with the spatial