similar to: Plotting a quadratic line on top of an xy scatterplot

Hi all, I'm having a problem once again, trying to do something very simple. Consider the following data frame: x <- read.table(textConnection("locus1 locus2 locus3 A T C A T NA T C C A T G"), header = TRUE) closeAllConnections() I am trying to make a new data frame, replacing "A" with "A/A", "T" with "T/T", "G" with

Dear all, I have a rather complicated problem. I am trying to loop through making graphs, so that the graph-making process is fully automated. For each graph, I'd like to make sure the corresponding title is formatted properly. The titles will be a combination of a gene name and numerical position within the gene. The gene name should be italic-bold, whereas the gene position should be

Dear listserv, Here is my latest formatting problem. I would like to rotate the x-axis labels by 45 degrees on a _barplot_. Apparently this is slightly different from the example given in the R FAQ, which is for rotating the x-axis labels on a scatterplot (http://cran.r-project.org/doc/FAQ/R-FAQ.html#How-can-I-create-rotated-axis-labels_003f). I have adapted that code, as best I could, and

I have an equation describing the best-fit model for a set of points (just 2 axes) that is in the form: y=b+mx+px^2 Where b is the intercept, m is the slope describing a linear term, and p is a slope of the quadratic term. I would like to plot this equation on a curve (I know the equation is y=(.1766x^2)+(.171x)+.101) on the original scatterplot. Any easy way to plot this equation and

Dear All: One more thing. I want to add the normal curve to the histogram. Is there away to stretch the peak of the curve to the top of the histogram or at least near to the top of the histogram. Please see the code below. Lizard.tail.lengths <- c(6.2, 6.6, 7.1, 7.4, 7.6, 7.9, 8, 8.3, 8.4, 8.5, 8.6,8.8, 8.8, 9.1, 9.2, 9.4, 9.4, 9.7, 9.9, 10.2, 10.4, 10.8,11.3, 11.9) x<-seq(5,12, 0.001)

Hi all, Please consider the following code: require(plotrix) l <- list(rnorm(50),rnorm(50,sd=2),rnorm(50,mean=3)) multhist(l) I have two things I need help with: (1) In the output, there are empty spaces on the x-axis. How would I eliminate these spaces? I want a nice, smooth, empty-spaceless x-axis. (2) How could I add tracing lines to each histogram? I am undoubtedly using the wrong

Hi all, I am looking to fit a logistic regression using the lrm function from the Design library. I am interested in this function because I would like to obtain "pseudo-R2" values (see http://tolstoy.newcastle.edu.au/R/help/02b/1011.html). Can anyone help me with the syntax? If I fit the model using the stats library, the code looks like this: model <- glm(x$trait ~ x$PC1 +

Hello again, I was hoping one of you could help me with this problem. Consider the sample data from R: > summary(prcomp(USArrests)) Importance of components: PC1 PC2 PC3 PC4 Standard deviation 83.732 14.2124 6.4894 2.48279 Proportion of Variance 0.966 0.0278 0.0058 0.00085 Cumulative Proportion 0.966 0.9933 0.9991 1.00000 How do I access the

Hi Abou, Try this: library(plotrix) curve(rescale(dnorm(x ,mean=mean(Lizard.tail.lengths),sd=sd(Lizard.tail.lengths)), c(0,6)),add=TRUE, col=2, lwd = 2) Jim On Mon, Sep 25, 2017 at 9:35 AM, AbouEl-Makarim Aboueissa <abouelmakarim1962 at gmail.com> wrote: > Dear All: > > One more thing. > > I want to add the normal curve to the histogram. Is there away to stretch > the

Hi all, I am trying to do something simple, but which is deviling me. I want to add an up-arrow to the x-axis, pointing to a specific location on the axis. I want the arrow to be as large as possible. Here is where I'm at with my code: #this part if from the ?plot example: require(stats) plot(cars) lines(lowess(cars)) #I am trying to use mtext to add the arrow... but I don't know how

Dear All: Is there is away to remove spacing at the top and the bottom of a plot? If so, any help will be appreciated. Please use this code as an example: par(mfrow=c(1,2)) lizard <- c(6.2, 6.6, 7.1, 7.4, 7.6, 7.9, 8, 8.3, 8.4, 8.5, 8.6,8.8, 8.8, 9.1, 9.2, 9.4, 9.4, 9.7, 9.9, 10.2, 10.4, 10.8,11.3, 11.9) n.draw <- 100 mu <- 9 n <- 24 SD <- sd(lizard) draws <-

Hello again, How do I split a data frame into smaller, completely separate data frames (rather than separate data frames comprising a single "list")? Consider the following data, and my coding attempt: x <- read.table(textConnection("id type number indv.1 bagel 6 indv.2 bagel 1 indv.3 donuts 10 indv.4 donuts 9"), header = TRUE) closeAllConnections() x.split <-

The default margins are set as lines below, left, top, and right using mar=c(5.1, 4.1, 4.1, 2.1). Just change the top margin something like 1.1: par(mfrow=c(1,2), mar=c(5.1, 4.1, 1.1, 2.1)) --------------------------- David L. Carlson Department of Anthropology Texas A&M University -----Original Message----- From: R-help [mailto:r-help-bounces at r-project.org] On Behalf Of AbouEl-Makarim

Greetings. Is there any way to get R to take a regression model object and draw a plot of the regression function? How about overlaying that plot over a scatterplot of the actual data? Thanks in advance for any help anyone can provide. Aaron ----- Aaron Solomon?? (??ben Saul Joseph??) ??Adelman E-mail??: ??adelmaas at musc.edu Web site??: ??http??://??people.musc.edu??/??~adelmaas??/??

Hi, I am trying to plot a 3d scatter plot using the rgl package but am having trouble. I have a matrix containing x, y and z co-ordinates and a fourth element related to a count variable. I would like to plot the points using plot3d with the sizes of the points related to the fourth element in the matrix. Is this possible with plot3d or do I need to use something else? I include a small example

I have a 45 x 16 data frame consisting of dissimilarities among 10 colors, giving in each column the 45 = 10*9/2 pairwise judgments for one of 16 subjects. The rownames identify each pair of colors, e.g, "AC" = ("A","C"), and the pairs are ordered by columns in the lower triangle of each distance matrix. > helm.raw <-

Hi there, I'm trying to make a scatterplot of removed versus duration for each type of bee. No matter what I try, I can't seem to get my code to work. Any help would be appreciated. Thanks! My r-code: dat$BEE <- with(dat, factor(BEE, c(1,2))) plot(REMOVED~DURATION,pch=BEE, col=BEE) REMOVED DURATION BEE 1 0.07 2 QUEEN 2 0.10 5 QUEEN 3 0.11 7 QUEEN 4 0.12 11 QUEEN 5 0.15 12 QUEEN 6 0.19

How do I pass parameters from one controller to another during redirect_to command? I want to pass both model and non-model objects. The solution I use is via session, but I rather pass it as parameters to the redirect_to Thanks. -- Posted via http://www.ruby-forum.com/.

Hi guys. Total newbie here. I''ve been doing web stuff since 1996 but only began the foray into scripting last year. I haven''t got my skull completely 360 degrees around OOP yet. It''s just me here (in Japan) and there are no Ruby groups in my area (never mind any in English). I''ve got a database table - real simple: question, answer, and id fields - and I

Hi folks, I'd like to use scatter3d (which is in R commander) to plot more than one dataset in the same graph, each dataset with a different color. The kind of stuff you would do with "holdon" in Matlab. I read a recent message that was posted to this list with a similar problem, but I couldn't understand the reply. Could someone give me one example? How do you plot subgroups