similar to: enable shlib for RPy2- where is source file?

Hi, I am trying to compile R with the command below in order to install rpy2. ./configure --prefix=/usr/local/R/R-2.9.2 --with-gnu-ld --with-cairo --with-x --enable-R-shlib However, error the I have gotten was: /usr/bin/ld: CConverters.o: relocation R_X86_64_32S against `R_FunTab' can not be used when making a shared object; recompile with -fPIC CConverters.o: could not read symbols: Bad

Hi - I am having trouble installing rpy2. I have already compiled R as a shared library, but I do not have admin privileges on so I am trying to install rpy2 with: pip install -user rpy2 but I am getting the following error: ======================================== ./rpy/rinterface/_rinterface.c:86:31: fatal error: readline/readline.h: No such file or directory compilation terminated. error:

I need to install rpy2 on RHEL6. The version of R in the 6 repos is 3.0, and rpy2 does not work with that version. I installed R 3.3.3 following the directions here: https://oguya.ch/posts/2017-03-18-building-R-on-rhel-6/. But even with 3.3.3 it's still failing. Using pip it fails with: /usr/local/lib64/R/lib/libR.a(CommandLineArgs.o): could not read symbols: Bad value and installing from

> On Jul 20, 2017, at 7:53 AM, Larry Martell <larry.martell at gmail.com> wrote: > > I need to install rpy2 on RHEL6. The version of R in the 6 repos is > 3.0, and rpy2 does not work with that version. I installed R 3.3.3 > following the directions here: > https://oguya.ch/posts/2017-03-18-building-R-on-rhel-6/. But even with > 3.3.3 it's still failing. Using pip it

Dear all, I'm trying to compile R 2.9.1 on my home directory under debian, and as I need to play with RPy, I tryed compile R using: ./configure --enable-R-shlib But, during the compilation, I get the error below: ------------------------------------- using as R_SHELL for scripts ... /bin/sh configure: creating ./config.status config.status: creating Makeconf config.status: creating Makefile

Dear list, there seems to be a problem with the standard location of R?s 64-bit libs at least under openSUSE. I had two user questions regarding the compilation of rpy2 for 64-bit systems. Personally I don`t know rpy2 but maybe someone on this list can decide if the mistake lies on R`s side or on rpy2?s side or in between. R-devel is installed in these cases, I asked. Latest R-base or

(I asked an earlier question on the rpy2 installation to the rpy2 list, the solution there was to edit the setup.py script, but this looks beyond what I can do unless someone tells me exactly what to modify). I have R 2.8.1 on 2 machines running ubuntu 8.04 (packages R-base and R-base-dev, among others, installed using Synaptic) and while the installation of rpy2 went fine on machine1, failed on

Hi While installing RPy2, I had curious problems which, if I traced them back correctly, have their root in the way that libR.so find the R installation directory. I wonder if this might be a subtle bug that only causes problems when one has several versions of R on one system but then can be very annoying and cause very strange behaviour. It seems to me that libR.so asks the Unix shell to

Hello, I have a problem with package "python-rpy2" with Debian Wheezy repository. I use this repo : deb http://cran.r-project.org/bin/linux/debian wheezy-cran3/ This package depends on "python-singledispatch" but it doesn't exist in official Debian repo... Could you help me to fix this issue ? Thanks a lot,

Hi This is my function. It serves an HTML page after the calculations. I'm connecting to a MSSQL DB using pyodbc. def CAPM(self,client): r=self.r cds="1590" bm="20559" d1 = [] v1 = [] v2 = [] print"Parsing GET Params" params=client.g[1].split("&") for items in

Dear list, When calling R from C, what appears like a spurious error can be triggered during the execution of chisq.test(x, y). This is happening when the following conditions are met: - x and y are "anonymous" C-level R vectors (they do not have a symbol), but they are protected from garbage collection - x and y are "not too small" (it was experienced as soon as they are

Dear list, To operate R from python via a Python package rpy, R has to be compiled with --enable-R-shlib. This is troublesome since none of the binary distributions (except for windows?) is built with this option so rpy users have to build R from source. This can be quite a challenge, especially on platforms like macOSX. Is it possible to provide both standard and shlib version of R by default?

Dear developeRs, I'm trying to build R (2.7.1, on an x86_64 running Linux, but I believe I have observed this on x86 and with earlier versions of R as well) using external BLAS and LAPACK libraries _and_ generating libR.so, libRblas.so and libRlapack.so. Without --enable-BLAS-shlib, configure is able to find and use the external LAPACK library: ./configure \

I am having a strange problem. I have been using python + rpy2 on my Mac for quite sometime now. I recently upgraded to OS X 10.8 from 10.6 and that's when the problem began. Now, when I try to load some R packages (like zoo) using robjects.r, python crashes with seg fault 11. Here's an example below: >> import rpy2.robjects as ro >> ro.r(''' library(zoo)

I am having a strange problem. I have been using python + rpy2 on my Mac for quite sometime now. I recently upgraded to OS X 10.8 from 10.6 and that's when the problem began. Now, when I try to load some R packages (like zoo) using robjects.r, python crashes with seg fault 11. Here's an example below: >> import rpy2.robjects as ro >> ro.r(''' library(zoo)

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Dear People, 1) When I use the R search engine to find SHLIB (the text says "You can search for keywords, function and data names and text in help page titles. Usage: Enter a string in the text field below and hit RETURN"), I get "no matches for "SHLIB" have been found!" On the other hand, when I do >help(SHLIB) at the R command line, the help page for SHLIB

Hello all, I'm trying hard to make R CMD SHLIB work on Windows XP (32-bit) - please note that I don't have the admin rights on the computer. In terms of setup, I have followed the procedure : => installed Rtools 2.14 => changed my path : PATH=C:\Trading\R\RTools\bin;C:\Trading\R\RTools\MinGW\bin;C:\Trading\R\R-2.14.1\bin\i386;C:\WINDOWS\system32;%OTHER_PATHS% But when I try R CMD

Dear list members, i am currently want to install Rpy2 in a linux box which has R 2.4.0 installed RPy requries R 2.7.0 or above but i have no root previlleges so my question is how to install R 2.7.0 on my own directory? and replace the system installed R 2.4.0 when i input R command from the bash Shell? thanks for any reply. Best Regards! -- Daofeng Li,PhD Candidate China Agricultural

How can one specify multiple extra flags to R CMD SHLIB? The example in R-exts section 5.5 MAKEFLAGS="CFLAGS=-O3" R CMD SHLIB *.c works for a single flag, but when I try MAKEFLAGS="CFLAGS=-g -O2 -Wall" R CMD SHLIB *.c only the first flag is used and the rest seem to be ignored (version 2.3.1, Mac OS X) -thomas Thomas Lumley Assoc. Professor, Biostatistics