similar to: How to reset libPaths for root

Using: natty alpha-2 Could anyone englighten me (or point me to a self-enlightment page) as to why when installing R using: > apt-get install revolution-mkl r-revolution-revobase revolution-r r-base-core There are 4 library paths available (installed by default): > .libPaths() [1] "/usr/local/lib/R/site-library" "/usr/lib/R/site-library" [3]

I have not intentionally set R_LIBS_USER. I looked for an Renviron.site file but did not see it in R/etc or my home directory. The strange part is that if I print Sud.getenv I see a value for R_LIBS_USER. However, this directory is not showing under libPaths. I though .libPaths should contain R_LIBS_USER. I also noticed that R related variables are not in the system or user variables because I

I'm not sure I follow what.the problem is. Are you trying to set R_LIBS_USER but R does not acknowledge it, or do you observe something in R that you didn't expect to be there and you are trying to figure out why that is / where that happens? Henrik On Sep 16, 2017 07:10, "Rene J Suarez-Soto" <rene.j.suarez at gmail.com> wrote: > I have a computer where R_LIBS_USER is

I have a computer where R_LIBS_USER is not found in libPaths. This is for Windows (x64). I ran R from the command line, RGui and RStudio and I get the same results. I also ran R --vanilla and I still get the discrepancy. The only thing I found interesting was that I also ran SET from the command line and the "R related variables" (e.g., R_HOME; R_LIBS_USER) are not there. Therefore

Hello, I'm having some trouble trying to set the .libPaths() on Windows 7, R-2.15.0 and R-2.15.1. The environment variables R_LIBS and R_LIBS_USER are set according to the help page for .libPaths() and the Rprofile.site file has the default setting, as shown below. R-2.14.1 recognizes the lib paths but not R-2.15. Is this a bug or am I doing something wrong? (I've also tried with

Hello, I am on a laptop with Win7, running R-2.12.1 if I click on Packages/InstallPackages I get : > utils:::menuInstallPkgs() Warning: unable to access index for repository http://cran.skazkaforyou.com/bin/windows/contrib/2.12 Warning: unable to access index for repository http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/2.12 Error in install.packages(NULL, .libPaths()[1L], dependencies

I want my local libraries to have priority over the system installed ones, which, as far as I can make out from help(".libPaths"), means they have to come first in that list (it doesn't actually_say_ so, but that seems to be the idea). We have R_LIBS_USER which looks made for specifying where I keep my own libraries. Unfortunately it comes last in .libPaths() [which appears to

I'm relaying a question from my institute's sysadmin: Would it be possible to modify update.packages() and related functions so that 'lib.loc' accepts integer values to specify a library from the .libPaths() vector? Many Linux users want to update all user packages (inside the R_LIBS_USER directory, e.g. ~/r/library) and none of the system packages (inside the /usr directory,

Hi, I just installed R on a new windows 7 machine and am having a probelm with the default libraries. The default libraries are not what I want them to be so when i say install.packages("XXX") the packages don't install where I want them to. Ideally everything would install to the same location as the base packages. When I look at my library paths I get the following. >

On Wed, Mar 18, 2020 at 8:04 PM Dirk Eddelbuettel <edd at debian.org> wrote: > > > On 18 March 2020 at 19:19, Henrik Bengtsson wrote: > | AFAIU, 'R CMD check --as-cran' tries to hide any site and user package > | libraries by setting R_LIBS_SITE and R_LIBS_USER. However, contrary > > What makes you think that? AFAIK --as-cran just sets a bunch of the (nearly

AFAIU, 'R CMD check --as-cran' tries to hide any site and user package libraries by setting R_LIBS_SITE and R_LIBS_USER. However, contrary to R_LIBS_SITE, it fails for R_LIBS_USER and the user's personal library is still available for test scripts. Should I revise my assumptions, or is that intentional? The short version. Shouldn't: $ R_LIBS_USER='' Rscript --vanilla -e

Hi, I have Debian Testing running on a Lenovo Thinkpad X1 Carbon (2015, 3rd gen.). I would like to have a package library independent of the installed R version. Under Ubuntu, I used to have the following line in ~/.Renviron: R_LIBS=/usr/local/R/library:/usr/lib/R/site-library This worked fine and /usr/local/R/library showed up in .libPaths(). However, under Debian (with the same ~/.Renviron),

On 16 March 2023 at 13:39, Felipe Contreras wrote: | I see R by default installs packages in ~/R. I know I can change the | default directory with R_LIBS_USER, but software shouldn't be | polluting the home directory. | | For example both python and node install packages to ~/.local/lib, | ruby to ~/.local/share. They don't install to for example ~/node. | | R should do the same: it

I have a local library 'dart' that imports "httr". It has routines that access central patient data such as birth date, so it is heavily used locally but of no interest to anyone else. The httr library (and 300 others) are in a shared directory, referenced by everyone in the biostatistics group via adding this location to the .libPaths in their default .Rprofile.

Hi, As comments are welcome I will give my two cents and a patch suggestion :-) 2017-07-06 10:42 GMT+02:00 Dirk Eddelbuettel <edd at debian.org>: > > > I have used such settings (such as un-setting R_LIBS_USER or its > predecessors) for over a decade, it just works (if you give write > permissions). It clearly helps us at work because everybody sees by > the default the

Dear all, I am forced to work in an environment without administrator rights. When using R2.13.1 on Windows 7 (64-Bit), I found that I can?t install or update any packages due to missing writing permissions. I managed to get full access to a directory on my C:\ drive now - but how do I specify that all libraries shall be installed into this directory? In Rcmd_environ I have the following

Dear Johannes, Dear Dirk, Thanks a lot for helping. Here is the missing information. Here is how I installed R. This is basically how Martin Maechler showed me to install R under Ubuntu (in several versions so that they are also recognized by ESS). My goal is to adjust this to make it work for Debian: 1) sudo emacs /etc/apt/sources.list # then add: deb

Hello, I am developing some packages. Package1 requires Package2, both of which I developed: Right now Package2 is installed properly here: /myHome/libraries/Package2 Package1 needs Package2. Package1 refers to Package2 both in the Roxygen @import field for one of the functions, and also in the Imports section in the DESCRIPTION However, when I do ?R CMD check Package1? I get: * checking

-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Hi I am sure I am missing something really basic, but I can't figure it out. I want to start R so that I can specify the location for the Library tree. In principel simple: As I only want it dependent on the directory I stat R in, I put a .Rprofile file in the directory. My default path is: > .libPaths() [1]

I'm having trouble running `updates.packages()' and installing into a personal library. Setup: 1. .Renviron file contains: R_LIBS_USER="~/lib/R/%p-library/%v" 2. Hence "personal library" is: ~/lib/R/i486-pc-linux-gnu-library/2.6/ 3. Library path upon starting R: > .libPaths() [1] "/home/johnny/lib/R/i486-pc-linux-gnu-library/2.6" [2]