similar to: SAMR for paired samples

I have a long list of posts posted on different days and many posts every day. I want them to arrange like following... Date1 ----- post1 post2 Date2 ----- post3 post4 post5 How can I (say) group them to appear all posts of one date under their related headng. Because records have so many different days, it is confusing me.. I need some generic solution. Thanks in advance. -- Posted via

Dear R list, I have written some code to produce several wireframe plots in a panel. They look good, but when I try to create a pdf, many (but not all) of the details I have specified are not reproduced. For example, the line width I have specified is not reproduced, and neither are the font sizes for the axis labels. I'm an R novice, so I could really use some guidance. Here is the code I am

I am trying to use a new (to me) package (samr) and even when I try to run a very simple example, I get this "cannot open the connection" error. The reason I am writing to r-help rather than to the authors of samr is I think this may be a more general R problem rather than a samr-specific problem. Perhaps something with my installation and write access to some particular place ? I am

I'm running samr (Two class unpaired), but keep getting the following error: perm= 1 Error in if (logged2) { : argument is of length zero <code> library (impute) library (samr) data = list (x=dat, y=y, geneid = matrix(twoUnpaired.data[,1],ncol=1), genenames = matrix(twoUnpaired.data[,2], ncol=1)) samr.obj <- samr (data, resp.type="Two class unpaired", nperms=100)

Hi BioC user, I have a problem extracting the gene set I would like to work with. Here is I work with my data: normData <- read.delim("normalizedData.txt",sep ="\t") ######### two class unpaired comparison # y must take values 1,2 classes <- c(-1,-2,1,2) #prepere the data for the samr analysis data.x <-as.matrix(normData[,8:11]) d=list(x=data.x,y=classes,

Hello Everybody, I am trying to perform SAM with the samr package. I am using the following code: sink ("R005") library(siggenes) library(samr) library(nnet) A <- as.matrix(read.table("D:\samrgenes1000.txt")) B <- as.matrix(read.table("D:\genenames1000.txt")) y1 <- c(rep(1,20),rep(2,6)) #there are 20 chips of one kind and 6 of the other kind. datasam =

I was writing unit tests for my models for a while. After that I was tweaking around and again continued writing unit tests. Earlier all my unit tests were working - successfully. But now WHen I run them, it gives me Loaded suite unit/post_test Started EEEE Finished in 0.112698 seconds. 1) Error: test_presence_of_body(PostTest): NoMethodError: undefined method `key?'' for

Hi, Can you please tell me what does the the function logged2 in R do im list or..? As I have > ?logged2 No documentation for 'logged2' in specified packages and libraries: you could try '??logged2' > ??logged2 No help files found with alias or concept or title matching ‘logged2’ using fuzzy matching. Thank you in advance, Amor [[alternative HTML version

Hello, I''ve modified tools/xenstore/xenstore_client.c to include a new utility, xenstore-chmod. This utility permits developers and administrators to manually change the permissions on arbitrary locations in XenStore from the command line. This is often helpful if you''re trying to debug an application that relies on XenStore and is encountering difficulties with permissions.

The entries in xenstore have permission attributes. The attributes can be easily altered by xenstore-chmod, however, I cannot find a easy way to see them. I''ve modified xenstore_client.c to raise a new utility. The utility checks the permission and makes an easy-look output. Please tell me any suggestions. Thanks. Signed-off-by: Frank Pan <frankpzh@gmail.com> ---

Fun, fun. I suggest checking the corresponding MTA configuration :) Return-Path: <David.Bear@asu.edu> Delivered-To: rohrbach@mail.webmonster.de Received: (qmail 56434 invoked by uid 801); 24 Sep 2004 15:51:37 -0000 Delivered-To: vrohrbach-karsten@rohrbach.de Received: (qmail 56429 invoked from network); 24 Sep 2004 15:51:36 -0000 Received: from post5.inre.asu.edu (129.219.110.120) by

Hi, A question. When I run gelman.diag and gelman.plot with mcmc lists obtained from MCMCregress, the results are following. > post.R <- MCMCregress(Size~Age+Status, data = data, burnin = 5000, mcmc = 100000, + thin = 10, verbose = FALSE, beta.start = NA, sigma2.start = NA, + b0 = 0, B0 = 0, nu = 0.001, delta = 0.001) > post1.R <- MCMCregress(Size~Age+Status, data

Hi, I know this question has come up before, but I couldn''t find a satisfying answer. Maybe I didn''t look well enough, so any pointers to old messages regarding this subject would be welcome too. I need some way to pass multiple ids to a resource. Something like /posts/13,14 If I do this I have to manually split the id on ","s in the action, and use post_path([post1,

Hi, I am new to R. and even though I've made my code to run and do what it needs to . It is taking forever and I can't use it like this. I was wondering if you could help me find ways to fix the code to run faster. Here are my codes.. the data set is a bunch of 0s and 1s in a data.frame. What I am doing is this. I pick a column and make up a new column Y with values associated with that

Dear list, I am trying to perform a significance analysis of a microarray experiment with survival data using the {samr} package. I have a matrix containing my data which has 17816 rows corresponding to genes, and 286 columns corresponding to samples. The name of this matrix is data.matrix2. Some of the first values of this matrix are: data.matrix2[1:3,1:5] GSM36777 GSM36778 GSM36779

I have a custom JSON response in which I display a collection of 15 posts along with related data like comments etc., as part of an API call. I am displaying the entire collection using Jbuilder . json.array!(@posts) do |post| .. .. end I want to display pagination links above the response of the 15 posts, in order to get the next set of posts with the appropriate next set of next page and

Signed-off-by: Matthew Daley <mattjd@gmail.com> --- tools/xenstore/xenstore_client.c | 15 +++++++++++---- 1 file changed, 11 insertions(+), 4 deletions(-) diff --git a/tools/xenstore/xenstore_client.c b/tools/xenstore/xenstore_client.c index 3ac214b..996ee64 100644 --- a/tools/xenstore/xenstore_client.c +++ b/tools/xenstore/xenstore_client.c @@ -134,8 +134,13 @@ static void do_ls(struct

hello, we just wanted to rollout our new puppetized dmz. therefore i change all ip adresses from the test network to the live ips. after restarting puppetmasterd it seems that the fileserver hangs: client log: debug: //true_base/update-check/File[/sbin/update_check.pl]/require: requires Package[libmail-sendmail-perl] debug: //true_base/puppetd/File[/etc/puppet/puppetd.conf]/require: requires

Hi all, Ruby 1.8.4 Windows XP Pro / Solaris 10 Mongrel 0.3.12 Rails 1.1.2 I''ve got a fairly simple and straightforward layered dispatching web service setup for my Rails app. This simple xmlrpc script works fine with WEBrick, but chokes on Mongrel. Is there anything special I need to do to make web services work with Mongrel and Rails? Some Google searching indicates that there had

Hello list! I have a proble trying to perform a SAM analysis using the function samr from the samr package. I have put the option *center.arrays=TRUE *in order to scale all the experiments to median=0. I would like to retrieved the scaled data but it seems that samr does not return it...Does anyone have any idea on this? Thanks a lot!!! E. [[alternative HTML version deleted]]