similar to: Reading timestamp column from MySQL

I'm guessing this is a FAQ but I can't find it and that it is probably not exclusive R related but relevant so I thought I'd ask: When I view the PDF output from Sweave (e.g. Example 1 from the author's web site at [1]) on a Linux system using the standard PDF viewer [2], the circles for the outliers in the plot [boxplot(Ozone ~ Month, data = airquality)] show up as the letter

Hi, I am trying to install gee on our server but I get the error below. I do not have root on this machine so no control on how R was installed itself. It looks like it cannot find blas libs, the only ones i can find on the machine are: /usr/lib64/libblas.so.3 -> libblas.so.3.0.3 /usr/lib64/libblas.so.3.0 -> libblas.so.3.0.3 /usr/lib64/libblas.so.3.0.3 and : $ R CMD config BLAS_LIBS

Hello List I'm moving this over from the bioC list as, although the problem I'm working on is biological, the current bottle neck is my poor understanding of R. I wonder if someone would help me with the following function. cumulMetric <- function(deMirPresGenes, deMirs){ ??? #need to match position of each miR in deMirPresGenes with its FC to form a vector of FC in correct order ?

Hi BioC user, I have a problem extracting the gene set I would like to work with. Here is I work with my data: normData <- read.delim("normalizedData.txt",sep ="\t") ######### two class unpaired comparison # y must take values 1,2 classes <- c(-1,-2,1,2) #prepere the data for the samr analysis data.x <-as.matrix(normData[,8:11]) d=list(x=data.x,y=classes,

Dear R People: I keep getting the "Error in normalizePath(path) :" while trying to obtain the necessary packages to use with the "Applied Spatial Statistics with R" book. I turned off the Firewall (from McAfee) but am still getting the same message. Does anyone have any idea on a solution please? > sessionInfo() R version 2.11.1 (2010-05-31) i386-pc-mingw32 locale: [1]

R gurus, Every so often(*) someone asks how to suppress scientific notation in printing, so I thought I'd give it a shot, but I need some help. The formatting decision is made(**) on line 286 of src/main/format.c : if (mF <= *m) { /* IFF it needs less space : "F" (Fixpoint) format */ where mF is the number of characters for "normal" printing and *m is the number

While implementing R's new 'altrep' functionality in the TERR engine, I discovered a bug in R's 'deferred_string' altrep object: it is not using the correct value of the 'OutDec' option when it expands a deferred_string. See the following example: R 3.5.1: (same results in R 3.6.0 devel engine built 10/5) > options(scipen=0, OutDec=".") >

On 02/02/2010 6:20 AM, Dimitri Shvorob wrote: > Ruben Roa has kindly suggested using 'scipen' option - cf. > >> fixed notation will be preferred unless it is more than ???scipen??? digits >> wider. > > However, > > options(scipen = 50) > x = c(1e7, 2e7) > barplot(x) > > still does not produce the desired result. This is strange. I see what

Hello, A small problem I can't solve > p <- 0.0001 > p [1] 1e-04 How can I force the printout of p to 0.0001? I have tried 'format', 'round', 'signif', 'print' in different combinations without success. Fredrik Lundgren

This is completely undocumented use of options, but it does cause a segfault with r-patched and r-devel on Linux: options(list('digits', 'scipen')) Strangely enough, options(list('digits')) and options(list(digits = 10, scipen = 2)) work as might be expected. Deepayan

Hi, i export data from an csv file like this :  Data <- read.csv2("c:/Art.csv",sep=",") # import data into R > Data <- Data [1:5,1:5]# extracting the first 5 rows and columns > Data   Policy.Number AXA.Entity Country LoB ccy.data 1         6e+13        BNL     BNL   P      EUR 2         6e+13        USA     BNL   P      EUR 3         6e+13         UK     BNL  

If I run the following: > windows() > > bringToTop(-1) > > interactive() [1] TRUE > > run <- readline(prompt = "Continue (Yes = 1, No = 2):") Continue (Yes = 1, No = 2): > dummy <- 1 > run [1] "" it does not allow user input though the session is interactive (it jumps right over the readline command). It would be great

Is there a better alternative to x = c(1e7, 2e7) x.lb = c(0,1e7,2e7) s.lb = format(x.lb, scientific = FALSE, big.mark = ",") barplot(x, yaxt = "n", ylab = "") axis(side = 2, at = x.lb, labels = s.lb) (I am sure there is a better alternative to line 2 :)). Thank you. -- View this message in context:

The labels on the x-axis are defaulting to scientific notation no matter how small cex.axis is. How can I override scientific notation to get the labels to print out as specified? Here is the code (UNIT here is 0.0105): plot(xm,yv,log="xy",ylim=c(0.1,20)/UNIT,xlim=c(0.004,20)*UNIT,xaxt="n",t ype="n") axis(1,

Hi! I got a rather stupid question (I think): Is there ANY option that makes R display numericals not like "1e-8" but as "0.00000001" by default ? And I need the outcome to be really numerical, so formatC(...) which produces a character or something like this won't be acceptable. Any help on this would be appreciated, thanx. Marc

Dear R devels Yesterday I was slightly surprised to notice that R incorrectly detected some of the locale settings. I am not sure whether this is important, but I preferred to drop a message. In the R output below, some entries that should have been "en_GB.UTF-8" are presented as "C". Regards Liviu > sessionInfo() R version 2.9.1 (2009-06-26) x86_64-pc-linux-gnu locale:

Hi all, As I am new to using R on a Linux machine I have another question if that's ok. I am trying to use the fix() or edit() function on this Linux machine but I get the following error message: Error in dataentry(datalist, modes) : invalid device In addition: Warning message: In edit.data.frame(get(subx,envir=parent),title = subx, ...) : Unable to create fontset

Has anyone come across the right combinations to print a limited number of digits? My trial and error approach is taking too much time. Here is what I have tried: > op <- options() > a <- c(1e-10,1,2,3,.5,.25) > names(a) <- c("A", "B", "C", "D", "E", "F") > # default > a A B C D

I get an error when running "make check" after building R-devel r70629 on Ubuntu 14.04. Here are the relevant lines in the file "reg-tests-1c.Rout.fail": > ## m1z uses match(x, *) with length(x) == 1 and failed in R 3.3.0 > ## PR#16909 - a consequence of the match() bug; check here too: > dv <- data.frame(var?1 = 1:3, var?2 = 3); dv[,"var?2"]

Dear All, I have never had this problem before. I run debian testing on my box and I have recently update my R environment. Now, see what happens when I try the most trivial of all plots > plot(seq(22)) Error in (function (display = "", width, height, pointsize, gamma, bg, : X11 module cannot be loaded In addition: Warning message: In (function (display = "", width,