similar to: what is a vignette?

Hi, I am very new to R so these questions may seem simple! I have a huge 2 sets of data(matrix 5x20000++) in the following formats , for example "data.txt" and "data2.txt": Date Time X Y 03/03/1983 20:00 0.1 990 I would like to recreate a new matrix which filters through "data.txt" and

I am pleased to announce to agenda for next weeks LondonR meeting: LondonR meeting - 13th July 2010 Date:?? ???????? Tuesday 13th July 2010 Time:??????????? 6pm - 9pm Venue:????????? The Shooting Star ??????????????????? 125 - 129 Middlesex Street ??????????????????? E1 7JF ??????????????????? (Nearest Tubes- Liverpool Street, Moorgate or Bank)? Agenda 6.00pm???????? Mango

Hi, I am trying to get R installed at work and I was asked if there were any companies that offered support. After searching on Google (many ways) and not find anything, I turn to you. BTW, I did see Revolution R supports their flavor. Thanks, Chris [[alternative HTML version deleted]]

Full_Name: Chris Evans Version: 2.3.1 OS: Windoze XP Submission from: (NULL) (217.34.100.197) If I give "vignette("introduction")" I get: Error in sprintf(gettext(fmt, domain = domain), ...) : use format %s for character objects vignette() works for some other vignettes and "vignette()" gets me a list of vignettes and shows three with the name

Dear list, we have a markdown vignette for our package in vignette/vignette.md This is not visible from within R with the vignette(package = "mypackage") command. I assume the reason is that the vignette function only shows PDF vignettes. Is there any way to circumvent this and display markdown vignettes directly from within R? I tried to seek the answer from R archives and search

In ?Sweave, it refers to Sweave User Manual. In the doc folder of utils package, I see "Sweave.pdf". However, I can't find it from within R > vignette("Sweave User Manual") Warning message: vignette ?Sweave User Manual? not found > browseVignettes("utils") No vignettes found by browseVignettes("utils") > library(help=utils) does not

Hi, this is tangentially related to the recent discussion on vignettes. vignette() currently produces a listing of available vignettes, but these are not clickable. Since R has a browseURL() function, it seems natural to have a version that produces HTML with clickable links. Here's an attempt at that: source("http://dsarkar.fhcrc.org/R/vignette-browser.R") browseVignettes()

Context: R2.15-0 on Ubuntu. 1. I get a WARNING from CMD check for "Package vignette(s) without corresponding PDF: In this case the vignettes directory had both the pdf and Rnw; do I need to move the pdf to inst/doc? I'm reluctant to add the pdf to the svn source on Rforge, per the usual rule that a code management system should not have both a primary source and a object

I think the online order of vignette files are not based on vignette title or filename alphabetically. I am just curious: by what order these vignette files were displayed online so I can make changes accordingly? Thanks, Zhu -----Original Message----- From: Duncan Murdoch [mailto:murdoch.duncan at gmail.com] Sent: Friday, March 04, 2016 10:47 AM To: Wang, Zhu; r-devel at r-project.org Subject:

I apologize that these questions are stupid and literal. I write to ask for clarification of comments in the R extensions manual about vignettes. I'm not great at LaTeX, but I'm not a complete novice either, and some of the comments are puzzling to me. 1. I'm stumbling over this line: "Make sure all files needed to run the R code in the vignette (data sets, ...) are accessible

Dear all, I'm trying to use a Markdown vignette with UTF-8 encoding. It compiles well when knitting the vignette in RStudio, but it fails to recognize the UTF-8 settings when building the source package. Can someone point out what I'm doing wrong? I tried to put the relevant information below. Best regards, Thierry Details: Using 64-bit R 3.1.2 with encoding = "native.enc"

[Env: Win Xp / StatET 2.0 / R 2.15.0] In my heplots package I extended the HE-examples.Rnw vignette under inst/doc. The package passes R CMD check on my machine: * using log directory 'C:/eclipse-3.7/heplots.Rcheck' * using R version 2.15.0 (2012-03-30) * using platform: i386-pc-mingw32 (32-bit) ... * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files

Dear colleagues, I am having issues trying to build a R package I recently wrote. I am using R 2.14.0 and my package depends on another package called aod. Running: R CMD Sweave vignette.Rnw is perfectly fine and the vignette compiles properly. but when I use R CMD build mypackage to build the tar.gz I get the following error: * installing the package to re-build vignettes * creating

How can I get a full URL for anything on CRAN? Using Safari, Google Chrome, and Firefox under OS X 10.11.2, I select a CRAN mirror from "www.r-project.org" and get a URL like "https://cran.rstudio.com/". Then I select "packages" and get a different web page, but the URL displayed doesn't change. I'd like to access the full URL of a vignette in a

On 5/3/16 11:29 AM, Thierry Onkelinx wrote: > Dear Mick, > > Note that both knitr and rmarkdown are listed under Suggests: both are > required to compile the vignette. Installing rmarkdown should solve > the problem. If not, please provide more information. OS, R version, > digest version, ... > > This is occurring in the context of an automated testing environment that

Dear all, I am writing a vignette that requires a file which I am not allowed to distribute, but which the user can easily download manually. Moreover, it is not possible to download this file automatically from R: downloading requires a (free) registration that seems to work only through a browser. (I'm talking here about the MSigDB from the Broad Institute,

Hello: Clicking "Knit Word" in RStudio 0.99.893 with R 3.3.0, works fine with a vignette with "output: word_document". However, "R CMD build" throws the following error: $ R CMD build pkgW2vignettes * checking for file ?pkgW2vignettes/DESCRIPTION? ... OK * preparing ?pkgW2vignettes?: * checking DESCRIPTION meta-information ... OK * installing the

Hello, I am trying to run "RCMD check" on a package. It performs OK, with the exception of a single warning: * checking package vignettes in 'inst/doc' ... WARNING Package vignette(s) without corresponding PDF: AnnotationFuncsUserguide.Rnw As I understand the problem, the vignette is not built. However, I have no problems in doing so manually. How do I fix this problem? I

Dear Duncan, The UTF-8 characters aren't properly rendered in the pdf version of the vignette. $?? ????? ?????? ?????? ????? ?? ?? is rendered as $????? ?????????? ???????????? ????? ?????? ? ???????? ???????? The same problem occurs when I use render("vignette.md", output_format = "mypackage::mystyle"), instead of render("vignette.md", output_format =

I?m preparing a package (fastR) for submission to CRAN, but the vignette index keeps going AWOL, or at least R CMD check ?as-cran thinks so. I?ve tried several things and gave myself the weekend to think of other things, but I can?t figure it out. Perhaps someone on the list can lend a hand. Here?s one example situation, where I build the index.html file myself and put it in inst/doc/index.html