Displaying 8 results from an estimated 8 matches similar to: "impute2mach GenABEL conversion problem"
2011 Dec 21
1
Looping over files
Hi,
?I have a list of files in one of my working directories:
"chr17.chunk1.dose.fvd"
"chr17.chunk1.dose.fvi"
"chr17.chunk1.prob.fvd"?
"chr17.chunk1.prob.fvi"?
...........
.........
........
"chr17.chunk10.dose.fvd"
"chr17.chunk10.dose.fvi"
"chr17.chunk10.prob.fvd"
"chr17.chunk10.prob.fvi"
And I am
2010 Feb 23
1
GenABEL - problems with load.gwaa.data
Hi all! I am using GenABEL on R for GWAS analysis. I am having a couple of
issues:
First, I am having a problem reading files (.map, & .ped, size 900Mb, using
windows 32-bit) onto R in the "convert.snp.ped" statement. I am thinking
this problem is likely due to the large size of the files & my version of R
is not able to handle them, since I can read in smaller files.
2013 Jan 08
1
problems when loading package GenABEL
Dear all,
since yesterday, I have been experiencing problems with the package
GenABEL. When I try to load the package (library(GenABEL)) I get the
following error message:
Loading required package: MASS
Error : .onLoad failed in loadNamespace() for 'GenABEL', details:
call: stringSplit[[1]]
error: subscript out of bounds
Error: package/namespace load failed for ?GenABEL?
The funny
2010 May 28
0
how to use GenABEL genetic information??
Does anyone use the R library GenABEL? I am using it to calculate SNP
interactions.
I have a list of 100 SNPs, I need to look at the interaction between each of
two SNPs among the list. my question is how to perform this in GenABEL. I
want to use the "lm" function, but don't know how to use the SNP
information.
for example:
result <- (lm(y~SNP1+SNP2+SNP1*SNP2))
the problem here
2012 Nov 09
0
Kinship2 and GenABEL
Hi,
I'm using kinship2 to calculate heritabilty, but I would like calculate in
GenABEL too.
I trying the code:
> require(kinship2)
> require(GenABEL)
> pedig = with(Dados, pedigree(id=IID, dadid=PAT, momid=MAT, sex=SEX,
famid=FID, missid=0))
> kmat = kinship(pedig)
> (mod1 = polygenic(altura ~ SEX + idade, data=Dados, kin=kmat))
Erro em intI(i, n = d[1],
2010 Mar 14
3
CRAN (and crantastic) updates this week
CRAN (and crantastic) updates this week
New packages
------------
* apcluster (1.0.1)
Ulrich Bodenhofer
http://crantastic.org/packages/apcluster
The apcluster package implements Frey's and Dueck's Affinity
Propagation clustering in R. The algorithms are analogous to the
Matlab code published by Frey and Dueck.
* BioPhysConnectoR (1.6-1)
Franziska Hoffgaard
2009 Aug 25
3
[Bug 23505] New: KDE's Kubrick has problems with xf86-video-nouveau driver
http://bugs.freedesktop.org/show_bug.cgi?id=23505
Summary: KDE's Kubrick has problems with xf86-video-nouveau
driver
Product: Mesa
Version: git
Platform: Other
OS/Version: All
Status: NEW
Severity: normal
Priority: medium
Component: Drivers/DRI/nouveau
AssignedTo: nouveau at
2007 Dec 09
8
zpool kernel panics.
Hi Folks,
I''ve got a 3.9 Tb zpool, and it is casing kernel panics on my Solaris
10 280r (SPARC) server.
The message I get on panic is this:
panic[cpu1]/thread=2a100a95cc0: zfs: freeing free segment
(offset=423713792 size=1024)
This seems to come about when the zpool is being used or being
scrubbed - about twice a day at the moment. After the reboot, the
scrub seems to have