similar to: getSubClasses()?

Hi, I want to extend the type list, but it looks like the names are not handled properly (in the show method), not the [ method. See below for code example. I imagine this comes from the S3/S4 mixing, but I would like to understand and the recommended work around (that avoid redefining all the list methods [, $, etc...). Thank you. Bests, Renaud # define S4 class that inherits from list

hello, if i load the RSQLite package in addition to the RPostgreSQL package, i get various errors when trying to use RPostgreSQL functions. here is an example transcript showing one such error: ========================================================== R version 2.15.0 (2012-03-30) [...] > packageVersion('RPostgreSQL') [1] 0.3.2 > packageVersion('RSQLite') [1] 0.11.1

I got the following warnings when I install R.oo. Are these warnings normal? Should I reinstall the package as mentioned in the warnings? How to reinstall? The sessionInfo() is at the end. > install.packages("R.oo", dependencies=T) Warning in install.packages("R.oo", dependencies = T) : argument 'lib' is missing: using '/utility/R' also installing the

What is the 'idiomatic' way of writing a vectorized switch statement? That is, I would like to write, e.g., vswitch( c('a','x','b','a'), a= 1:4, b=11:14, 100 ) => c(1, 100, 13, 4 ) equivalent to ifelse( c('a','x','b','a') ==

I noticed about a couple weeks ago that my R start up script starting showing the below errors, following the line "Type 'q()' to quit R" Not sure what I did different and so far it hasn't caused major problems but kind of fear that it will. Can you please help? I also posted my Rprofile below. Attempting to load the environment 'package:R.utils' R.methodsS3 v1.2.2

Hi, ?pairlist gives no explanation about what exactly is the difference between a pairlist and a list (except that a pairlist of length 0 is 'NULL'). So, what's a pairlist? class(.Options) [1] "pairlist" Some strange things about the "pairlist" type: > showClass("pairlist") Error in getClass(Class) : "pairlist" is not a defined class

Hi Guys, I am new to R and just trying to write a small script to automate a couple commands. But I run into the setwd(): cannot change working directory. I googled a little bit and tried all fixes/suggestions with no success. Basically I have a script that works from inside a directory with my data (/home/sean/Rtest/Data01). Now I want to modify the script to make it run from the upper directory

Dear list, This probably makes perfect sense from the language designers' perspective, but at least for me this was/is quite an interesting and unexpected behavior which I thought might be worth sharing: The default value of argument |where|in function |getClasses()|seems to vary depending on whether |getClasses()|is called inside a *standard R function*or a *formal S4 method*. It is

Hi, I was stumped by this. The two S4 objects below looked exactly the same: > a1 An object of class "A" Slot "aa": integer(0) > a2 An object of class "A" Slot "aa": integer(0) > str(a1) Formal class 'A' [package ".GlobalEnv"] with 1 slots ..@ aa: int(0) > str(a2) Formal class

Hello everyone, I am probably not the only one having trouble with this package but here goes. I want to install XML on Ubuntu. I installed libxml2-dev and everything works out fine until I get the following: Error in reconcilePropertiesAndPrototype(name, slots, prototype, superClasses, : No definition was found for superclass "namedList" in the specification of class

'?removeClass' shows that 'removeClass' is from package 'package:methods'. Is there a command which can show me all the functions and the classed defined in a package such as 'package:methods'?

Hello, I use the function 'aggregate' a lot. One small annoyance is that it is necessary to name the factors in the 'by' list to get the names in the resulting data.frame (else, they appear as Group.1, Group.2...etc). For example, I am forced to write: aggregate(y,list(f1=f1,f2=f2),mean) instead of aggregate(y,list(f1,f2),mean) (for two factors with short names, it is not such

Hi, It seems there are 2 slightly different ways to create a virtual class with no slots (a kind of Java "interface"): with or without specifying 'representation("VIRTUAL")'. > setClass("A", representation("VIRTUAL")) [1] "A" > showClass("A") Virtual Class No Slots, prototype of class "S4" >

Hi, Short story ----------- setClassUnion("ArrayLike", "array") showClass("ArrayLike") # no slot setClass("MyArrayLikeConcreteSubclass", contains="ArrayLike", representation(stuff="ANY") ) showClass("MyArrayLikeConcreteSubclass") # 2 slots!! That doesn't seem right. Long story ----------

On 03/18/2016 03:28 PM, Michael Lawrence wrote: > > On Fri, Mar 18, 2016 at 2:53 PM, Herv? Pag?s <hpages at fredhutch.org > <mailto:hpages at fredhutch.org>> wrote: > > Hi, > > Short story > ----------- > > setClassUnion("ArrayLike", "array") > > showClass("ArrayLike") # no slot > >

Dear All user, Hello, I'm a student and I have some trouble with the experimental (columns-experiments) design of my project. I use a randomized block design with 4 treatments including a control. For each treatment, I use 3 replicates and 3 blocks. The treatments are: -T1 = COD (300 mg/Lit) COD=chemical oxygen demand -T2 = COD (200 mg/Lit) -T3 = COD (100 mg/Lit) -T4 = COD (0 mg/Lit) as

On Fri, Mar 18, 2016 at 2:53 PM, Herv? Pag?s <hpages at fredhutch.org> wrote: > Hi, > > Short story > ----------- > > setClassUnion("ArrayLike", "array") > > showClass("ArrayLike") # no slot > > setClass("MyArrayLikeConcreteSubclass", > contains="ArrayLike", >

On 03/19/2016 01:22 AM, Michael Lawrence wrote: > > > On Sat, Mar 19, 2016 at 12:10 AM, Herv? Pag?s <hpages at fredhutch.org > <mailto:hpages at fredhutch.org>> wrote: > > On 03/18/2016 03:28 PM, Michael Lawrence wrote: > > > On Fri, Mar 18, 2016 at 2:53 PM, Herv? Pag?s > <hpages at fredhutch.org <mailto:hpages at

Hi, I have this: lme(y~x1+x2,random=~1|x1/x2) How to make this random effect using lmer? I try this: lmer(y~x1+x2+(1|x1/x2) But it dont work. Any idea? Thanks Ronaldo -- System halted! -- |> // | \\ [***********************************] | ( ?? ?? ) [Ronaldo Reis J??nior ] |> V [UFV/DBA-Entomologia ] | / \ [36570-000 Vi??osa -

On Sat, Mar 19, 2016 at 12:10 AM, Herv? Pag?s <hpages at fredhutch.org> wrote: > On 03/18/2016 03:28 PM, Michael Lawrence wrote: > >> >> On Fri, Mar 18, 2016 at 2:53 PM, Herv? Pag?s <hpages at fredhutch.org >> <mailto:hpages at fredhutch.org>> wrote: >> >> Hi, >> >> Short story >> ----------- >> >>