Displaying 20 results from an estimated 300 matches similar to: "colored venn diagram"
2009 Oct 29
0
a minor bug in "venn" from gplots?
Hi list,
I found this one when I was trying to output the Venn diagram to a .pdf file.? When there are 4 sets of groups to draw, the .pdf file automatically has 3 pages and the figure only appears on the 3rd page in the .pdf file with the first 2 pages being blank.? Try the following: (I'm using R-2.9.0 on WinXP, gplots 2.7.1).? gplots 2.7.3 has the same problem.
2011 Jul 13
0
venn diagram color using "venn"
Hi, I found a package "venn" to create a venn diagram. I need to color the
circles. Can any one suggest me how to do using "Venn".
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2012 Jan 19
1
venn.diagram how to control circle diameter
Hi there,
Is there a way to control the circle diameter in venn.diagram function of
VennDiagram package?
Thanks
Mike
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2011 Dec 02
0
Save Venn-diagram (Vennerable) together with table and plot in single pdf page
Dear R-users
I want to save a list with characters a point plot and a Venn diagram in
a single pdf page.
I am successful to do this when I use a character list and two point plots.
However when I try to replace the first point plots with my Venn diagram
(built with Vennerable package, compute.Venn() and plot.Venn()) the Venn
plot will not position at the right place in the pdf.
I guess there
2010 Dec 07
1
colorful venn diagram
Hi all,
I am trying to plot a venn diagram using vennDiagram in limma package,
but I have no idea how to have it colorful such as the color one created
by the following website: http://www.pangloss.com/seidel/Protocols/venn.cgi.
Any one has any advice?
Thanks,
D.
2009 Sep 04
1
limmaGUI anomaly: top-table & venn-diagram for linear model
Hello,
In limmaGUI, after running a linear model for a single gene & time point
(mutant vs control), the venn-diagram for differentially expressed genes
with a p-value cut-off gives a different number than the top-table with
the same cut-off (2600 vs. 791).
I have seen the same thing happen before for multiple time points (when
the venn-diagram is more relevant)
Any ideas what is going on?
2011 Jul 13
1
venn diagram in percentage
Hi,
I am a beginner with "R" and found a package "venn" to create a venn
diagram. I tried this “venn” function to generate venn diagram, but i need
*Percentage values* instead of counts(frequency) in the oval(circles) of
Venn diagram. Output :
http://r.789695.n4.nabble.com/file/n3664380/output.docx output.docx
I have written have the code as below :
# venn diagram for more
2011 Oct 02
1
generating Venn diagram with 6 sets
Dear r-helpers,
Here I would like to have your kind helps on generating Venn diagram.
There are some packages within R on this task, like venneuler, VennDiagram,
vennerable. But, vennerable can not be installed on my Mac book. It seems
VennDiagram can not work on my data. And, venneuler may have generated a
wrong Venn diagram to me.
Do you have any experience/expertise on those Venn diagram?
2006 Sep 26
2
venn diagram with more than three vectors
Hi,
I am using venn diagram function in AMDA to plot the venn diagram. But it seems in this function, it can only plot 3 or less vectors. Is there a way to plot the venn diagram with more than 3 vectors?
Please help.
Thanks.
Z
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2009 Aug 03
2
combine venn diagram and pie chart
Hi R users,
I am wondering if it there is any R's function helping integrate venn
diagram and pie chart to compare two related datasets.
I know the package limma(bioconductor) has something built-in for making
venn diagram, but I guess it would be very painful to use line and text to
specify the proportions in the fashion of pie chart .
Thanks in advance,
Kevin Chang
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2012 Jan 30
3
Venn Diagram help!!!!
Hi there ! I've got 7 Samples that may contain 29 differents kinds of
material.... every line below corresponds to a differente kind of material,
example: Sample 1, 2,3,5 and 6 has material 1 .... So I want to know how can
I do a Venn Diagram with the data below .... ps ( it was generated by a csv,
where every line is sep with (";")) Can someone helps me ?
thanks
csv file :
2012 Feb 28
2
from data.frame to Venn diagram
Hello All,
I have a data.frame with this structure:
m <- matrix(sample(c(rep('yes', 10, replace = TRUE), rep('no', 10,
replace = TRUE), NA), 500, replace = TRUE), nrow = 100, ncol = 5)
colnames(m) <- colnames(m, do.NULL = FALSE, prefix = "col")
m <- as.data.frame(m)
I need to generate a Venn diagram from this data.frame, displaying the
various intersections of
2011 Mar 09
3
Venn Diagram corresponding to size in R
I was wondering if anyone could help me figure out how to make a Venn
diagram in R where the circles are scaled to the size of each dataset. I
have looked at the information for venn (in gplots) and vennDiagram (in
limma) and I cannot seem to figure out what parameter to change. I have
looked this up online and do not seem to be seeing anyone else who has
posted this question or the answer to it
2007 May 31
3
Venn diagram
Hello,
I am a total beginner with ?R? and found a package ?venn? to
create a venn diagram.
The problem is, I cannot create the vectors required for the diagram.
The manual say:
"R> venn(accession, libname, main = "All samples")
where accession was a vector containing the codes identifying
the RNA sequences, and libname was a vector containing the codes
identifying the
2001 Mar 15
5
Whats all this Linux business anyway?
Alright lads,
I'm Rick Masters and I know very little about networks, but for some mad
reason I have been given the job of setting up a Linux File Server on an NT
network. How the dickens does that work? Anyway I need as much help as you
can be bothered to give me. And there is a free pizza in it for the guy who
helps me get it working :-)
You are all super and great fun (I'm sure).
2004 May 26
1
Venn diagrams
Hello there,
Does anyone know how to plot venn diagrams in R?
Ive searched the mail archive lists but to no avail.
Regards,
Wayne Jones
KSS Ltd
Seventh Floor St James's Buildings 79 Oxford Street Manchester M1 6SS England
Company Registration Number 2800886
Tel: +44 (0) 161 228 0040 Fax: +44 (0) 161 236 6305
mailto:kssg@kssg.com http://www.kssg.com
The information in this
2006 Sep 02
0
venn diagrams
I need to generate venn diagrams for some of my data. I am using the
venn library. Is there a function that generates the ids and attributes
that I can pass on to venn
Library(venn)
ids <- c(1,1,1,2,2,2,3,3,3,4,4,5,5,5,6,6,7,8,9,10)
attributes <-
2011 Nov 11
1
proportional area venn diagrams?
In http://finzi.psych.upenn.edu/R/Rhelp02a/archive/14637.html
some rudimentary R functions were given for drawing
proportional area venn diagrams with area of each intersection ~ the
count in a 2 x 2 x 2 table.
I'm interested in this, for another application: showing the
correlations among Y, X1, X2 using
area ~ r^2 of each pair (sometimes called a Ballantine diagram).
Before I attempt
2010 Jan 31
2
help on Venn's diagram
Hello!
I have this problem: I want to create a Venn's diagram with three lists of genes'names. The first is all the genome, the second a subset of it comprising all mitochondrial genes, and the third including all genes that correlate with a given gene.
This is what I do:
> library(gplots)
> A<-read.delim("F:/.../mito genes just names.txt")
>
2005 Jun 09
5
How to plot more than 3 sets in Venn Diagrams?
I'm trying to plot Venn diagrams with more than 3 sets (5 actually) in order to describe graphically the genetic variation between populations.
I tried the limma library but realised it can only plot 3 sets.
Is there any solution? Of course I could plot the chart manually but it'll take too long (have other datasets)..... One of my dataset is given below.
THanks for any advice.
j