similar to: a question about beadarray in R

Hi, there. I am trying to read a file into R, but I got following message Error in file(file, "r") : unable to open connection In addition: Warning message: cannot open file `SwirlSample.txt' . In fact, my file has been already in the current working directory. My R is running on window operation system instead of UNIX. Thanks. Shizhu Zang Department of Biochemsitry Peking

Dear R users, I am using the beadarray package. I am trying to upload raw bead-level data using these commands: ######################################################## library(beadarray) datadir <- ("C:/Computer_programs/R/beadarray/cecilia") targets = read.table("targets.txt", sep = "\t", header = TRUE, as.is = TRUE) BLData = readIllumina(arrayNames =NULL,

Hi , there: I used function source to download the package but found > source("http://www.bioconductor.org/getBioC.R") Error in file(file, "r") : unable to open connection In addition: Warning message: unable to resolve 'www.bioconductor.org'. Then I downloaded the packages from CRAN and found > local({a <- CRAN.packages() +

Hi, there. I used the function read.maimages in limma package to analyze the microarray data .but I got following message >RG <- read.maimages(targets$FileName, source="spot") Error in grep(pattern, x, ignore.case, extended, value, fixed) : invalid argument I don't know what is the matter Thanks a lot Regards Shizhu Zang Department of Biochemsitry Peking

hi I am going to crazy.I want to use beadarray package in R, but I cant. when I want install it, I encounter to this message "Loading required package: hwriter Loading required package: sma Error in library(pkg, character.only = TRUE, logical.return = TRUE, lib.loc = lib.loc) : 'sma' is not a valid installed package" I cant find sma and hwriter packages, it seems that they are

Hey So sorry to be a total newbie, but i'm just finding my feet with R. I heard on the grapevine i could recreate a scanned microarray image, or at least get a good graphic of it from a just a data file. I have .txt files for illumina beadarrays but no images cos the service we used didn't send them. The 'beadarray' package seems to require TIFFs to get the graphic output. Does

Greetings - Is it possible, inside .First.lib, to find out the version number of the package that is being loaded? If only one version of the package has been installed, we could scan the DESCRIPTION file, something like .First.lib <- function(lib, pkg) { library.dynam("spatstat", pkg, lib) dfile <- system.file("DESCRIPTION", package="spatstat")

Hi, everyone, I ran the test case in "Introduction to the Bioconductor marrayInput package first. When I ran the session in (read.marrayRaw) I got the following error messages. Other sessions work well. The functions and errors are labled with blue and red respectively. >mraw <- read.Spot(path = datadir, layout = galinfo$layout, gnames = galinfo$gnames, target = swirlTargets) Error

hi I've some problems with netback 1.what's mmap_pages for, which come from balloon operation ？ mmap_pages = alloc_empty_pages_and_pagevec(MAX_PENDING_REQS) 2.what's the meaning of "refcnt" defined in netif_t (netif->refcnt) 3.irq enable and disable such as disable_irq(netif->irq); why netback use such enable & disable operations while netfront dont use for its

hi all, I noticed "CONFIG_XEN" appears many times in Xen source code. I''m confused about the meaning of "CONFIG_XEN". For example, in "gnttab.c", the definations of gnttab_map() and gnttab_resume() vary with "ifdef CONFIG_XEN" or not. And I also noticed ifndef CONFIG_XEN , the file <platform-pci.h> is included. So my questions

From: Hongyong Zang <zanghongyong at huawei.com> Vhost-net uses its own vhost_memory, which results from user space (qemu) info, to translate GPA to HVA. Since kernel's kvm structure already maintains the address relationship in its member *kvm_memslots*, these patches use kernel's kvm_memslots directly without the need of initialization and maintenance of vhost_memory. Hongyong

From: Hongyong Zang <zanghongyong at huawei.com> Vhost-net uses its own vhost_memory, which results from user space (qemu) info, to translate GPA to HVA. Since kernel's kvm structure already maintains the address relationship in its member *kvm_memslots*, these patches use kernel's kvm_memslots directly without the need of initialization and maintenance of vhost_memory. Hongyong

hi, I want to know some details about this network accelerated modules. 1)what''s the main purpose of this plugin module? 2)any requirement for harware nic? or other hardware platform? 3)I''ve not found the code in Xen3.1 code set. so was it added to xen source code yet? Thanks in advance _______________________________________________ Xen-devel mailing list

Hi Everyone: It turns out that there's still a small ( I hope ) problem. I'm close but that only counts in horse shoes and hand grenades. Here's my problem: When trying to load a package that I am writing, the load is looking for the packageDescription function in the utils package but not finding the utils package. I looked on cran and utils is not there which makes me think that it

Recently I was trying to cite a package where the authors have ? and ? in their names. I found that on Windows the citation() function did not return the authors' names at all, but on Linux there was no problem (sessionInfos at the bottom): On Windows, no author names are returned: #--------------- > citation("readr") To cite package ?readr? in publications use: (2017).

I'd be curious to know what others think of Rich's patch. If it is acceptable, I can spend time that I was going to look at it this week on another bug. -----Original Message----- From: Rich Calaway Sent: Friday, June 23, 2017 6:34 PM To: Nathan Sosnovske <nsosnov at microsoft.com>; Duncan Murdoch <murdoch.duncan at gmail.com>; Andrie de Vries <apdevries at gmail.com>

I received the following error when I attempted to update my packages: updating HTML package descriptions Warning messages: 1: DESCRIPTION file of package 'file28862' missing or broken in: packageDescription(p, lib = lib, fields = pkgFlds) 2: number of columns of result not a multiple of vector length (arg 2) in: rbind(retval, c(p, lib, desc)) 3: DESCRIPTION file of package

When I run R CMD Rd2pdf on the man pages of a package, ie R CMD Rd2pdf man I get Converting Rd files to LaTeX Warning in parse_Rd("man/mpra-package.Rd", encoding = "unknown", fragment = FALSE, : man/mpra-package.Rd:6: unknown macro '\packageTitle' Warning in parse_Rd("man/mpra-package.Rd", encoding = "unknown", fragment = FALSE, :

Hi Duncan, Thanks for your reply. Yes, it does seem to be specific to the CTYPE setting to Chinese on Windows. If I set it to English using Sys.setlocale() there is no problem, then back to Chinese and the authors disappear: Sys.setlocale("LC_ALL","English") citation("readr") #' To cite package ?readr? in publications use: #' #' Hadley Wickham, Jim

Hi Duncan, I'm guessing I'll be able to look at this over the weekend/next week (probably closer to next week). It is on my list of things to do and I've just had a few other prior commitments that I have to finish first. Sorry for the delay. I'll chime in with a status update next week. Nathan -----Original Message----- From: R-devel [mailto:r-devel-bounces at r-project.org]