similar to: Reverse Y-axis on hist2d diagram

I am plotting a heatmap using the hist2d function: require("gplots") x <- rnorm(2000) y <- rnorm(2000) hist2d(x, y, freq=TRUE, nbins=50, col = c("white",heat.colors(256))) However, I would like to flip the vertical y axis so that the upper left corner serves as the y-origin. How can I do that? Ralf

The following code produces a heatmap based on normalized data. I would like to mirror x and y axis for this plot. Any idea how to do that? require("gplots") x <- rnorm(500) y <- rnorm(500) hist2d(x, y, freq=TRUE, nbins=50, col = c("white",heat.colors(256))) Best, Ralf

Hello, I have created two histograms with: hist2d(gps2, nbins=200, col = c("white",heat.colors(16))) Both of them have the same range and the same number of bins. Now I would like to compare them bin by bin and plot the results. Could someone please tell me how to do that. I searched the man pages and the web, but couldn't find anything. Thank you very much. Phil

Dear R-wizards, I'm trying to plot "binned scatterplots", or 2d histograms, if you wish, for a number of groups by using the lattice functionality it works fine for one group at a time, and probably I could find a work-around, but I prefer to do it the elegant way here's an example of what I want, what I tried and where it goes wrong: require(gregmisc) require(lattice) #toy

I'd like to use the hist2d function. What library contains it? Thanks! Simon Firestone Economist, Fair Lending Enforcement Division of Consumer and Community Affairs Federal Reserve Board Washington, DC 20551 simon.b.firestone@frb.gov (202) 785-6056 [[alternative HTML version deleted]]

Dear R users, I am just starting with R (v. 1.0.0) and I use Vehables & Ripley's MASS book for examples. In the intro session, there is an example of a 2D histogram on an 8x8 grid: x <- rnorm(1000) y <- rnorm(1000) contour(hist2d(x,y,,,8,8)) R complains: Error in contour(hist2d(x, y, , , 8, 8)) : couldn't find function "hist2d" I looked for hist2d() in the

I am having difficulty installing packages. For example, here I have tried to install "gplots" but to no avail. I have tried multiple mirrors and different packages (errbar) but after installation I seem to be unable to access any of the commands or help pages. I am a little concerned about the 'lib' missing message but this has been present for previous successful package

Announcing gplots 2.5.0 --------------------------------- gplots provides additional plotting functions, including several enhanced versions of base R functions. Provided functions include: balloonplot, bandplot, barplot2, boxplot.n, colorpanel, heatmap.2, hist2d, lowess, ooplot, overplot, plot.lm2, plotCI, plotmeans, qqnorm.aov, residplot, rich.color, sinkplot, smartlegend, space,

Announcing gplots 2.5.0 --------------------------------- gplots provides additional plotting functions, including several enhanced versions of base R functions. Provided functions include: balloonplot, bandplot, barplot2, boxplot.n, colorpanel, heatmap.2, hist2d, lowess, ooplot, overplot, plot.lm2, plotCI, plotmeans, qqnorm.aov, residplot, rich.color, sinkplot, smartlegend, space,

Dear R users, I have a question regarding how to make row labels readable in a heat map. I have successfully made a heat map using function "heatmap.2" in the package "gplots". However, as there are many rows in the heat map, I have difficulties labeling them (heatmap.2 provides a parameter "labRow" to label the row names, but as I have too many rows, I can not make

Hi, what i need is as the example i attached in the box plot. As you can see, the boxplot have margins and it kind of follow the coding I've added, but, it does not happen for the heat map. Could you help me with this.. Thanks in advance. the following is the coding i've used: # Draw the heatmap # heatmap.r # # Purpose: Create a heatmap # # Input: Data matrix as

Dear R users,   I need to draw a barplot with 2 Y axis. I have 3 days each of wich having 2 groups (and error bar for each of them). The height of the 3rd day is too tall compared to others. That's why I have to use a second Y axis for that. I am using  "barplot2" function of "gplots" library (to be able to add error bars as well). Data and  codes currently I am using is

Hi, I am drawing a heat map using gplots of R package. The file (new4) is having values 0 and 1 only. library(gplots) library(marray) x=read.table("new4", header=TRUE) mat=data.matrix(x) heatmap.2(mat, col=colorRampPalette(c("black","red"))(256), #col=greenred(75), Rowv=TRUE, Colv=TRUE, distfun = dist, hclustfun = hclust, dendrogram = c("row"), scale =

Dear colleagues, the code below generated the two effects plots that I have attached. I hope they are not stripped. The original two models are as follows: green_shift_mod=glm(green_shift ~ educ+party_id+educ:party_id, family=binomial, data=x) carbon_tax_mod=glm(carbon_tax ~ educ+party_id+educ:party_id, family=binomial, data=x) Then, I try to plot the effects of party_id by education for

Hi all, I couldn't install gplots package. > install.packages("gplot") Warning message: package 'gplot' is not available (for R version 3.0.2) i want to use heat maps.2 function. can you please tell me how to install this package or are there any alternatives. Thanks in advance :) [[alternative HTML version deleted]]

Hello! I have this problem: I want to create a Venn's diagram with three lists of genes'names. The first is all the genome, the second a subset of it comprising all mitochondrial genes, and the third including all genes that correlate with a given gene. This is what I do: > library(gplots) > A<-read.delim("F:/.../mito genes just names.txt") >

Greetings, I have two matrices, read in from raster data stored in GRASS. Each matrix represents the output of a aggregation process on categorical data (Nomial / Ordinal) - derived from imagery. I have compared these two data by the following methods: ***** pretending the data is continuous approaches (flawed i am sure...) 1. computing a difference map by computing the absolute difference

Hey, I am still working on my heat map (for those who are read my previous post about row.names)… Now, I would like to save my heat map.2 in .png or .tiff in order being able to work on the picture in photoshop, but it doesn't work. I'am using (as I have found on some forum) > png("heatmap.2.png) # and it just doesn't work. when I try doing it with::

Hello, We have submitted the updated version of gdata, gmodels, gplots and gtools to CRAN. Summary of the changes is attached at the end. Best, Nitin ______________________ Nitin Jain, PhD <nitin.jain at pfizer.com> Non Clinical Statistics Pfizer, Inc. (Groton, CT) Bldg: 260, # 1451 Ph: (860) 686-2526 (Office) Fax: (860) 686-6170 Brief description of changes: CHANGES IN GDATA 2.1.2

Hello, We have submitted the updated version of gdata, gmodels, gplots and gtools to CRAN. Summary of the changes is attached at the end. Best, Nitin ______________________ Nitin Jain, PhD <nitin.jain at pfizer.com> Non Clinical Statistics Pfizer, Inc. (Groton, CT) Bldg: 260, # 1451 Ph: (860) 686-2526 (Office) Fax: (860) 686-6170 Brief description of changes: CHANGES IN GDATA 2.1.2