similar to: R-installation regarding.

Hi all , I have one query. i have list of some .cel files. in my program i have to mention the path of these .cel files part of my program is, rna.data<-exprs(justRMA(filenames=file.names, celfile.path=*datadir*, sampleNames=sample.names, phenoData=pheno.data, cdfname=cleancdfname(hg18_Affymetrix U133A))) in the place of "datadir" i have to mention the character string of the

All, Apparently the attachment did not make it through the list serve. I am having difficulty installing R-2.4.1 on Mandriva Linux 2007 Discovery. Thanks to the help of Doug Bates I got further along the path (Thanks Doug!!). I now cannot figure out which line of code needs modified in order for configure to complete. Please see below for the last several lines of output. checking whether

Dear members, this can sound trivial for some people but I don't have experience on compilation. I'm trying to install R-2.2.1 on a laptop running Mandriva 2006. I already installed many of the recommended packages/libraries but it seems that something is still missing. The problem is that I cannot identify... Could somebody give me some advise? I put the output of the command

A problem came when I installed R-2.15.0 in RedHat Linux from souce. when ./configure is commited , there is a error message like: =========================== sudo ./configure Password: checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu loading site script './config.site' loading build-specific script './config.site'

Dear Sir, When I install R on SUSE Linux Enterprise Server 10 (ia64) (Linux a450 2.6.16.21-0.8-default #1 SMP Mon Jul 3 18:25:39 UTC 2006 ia64 ia64 ia64 GNU/Linux) it reported the wrong messages at the end: # ./configure checking build system type... ia64-unknown-linux-gnu checking host system type... ia64-unknown-linux-gnu

Dear friends I try to install R-project in SUSE 10.0 LINUX. I run the ./configure. The last lines during the run is checking readline/history.h usability... no checking readline/history.h presence... no checking for readline/history.h... no checking readline/readline.h usability... no checking readline/readline.h presence... no checking for readline/readline.h... no checking for

hi every body. Im new in this program. Im traying to install R in linux suse10.0 in two following form: a) with the file R-2.5.0.tar.gz b) and the rpm file : R-base-2.5.0-2.1.i586.rpm ****** In the first case a) when i uncompressed and type: linux:/opt/R/R-2.5.0 # ./configure the followind message is showed linux:/opt/R/R-2.5.0 # ./configure checking build system type...

Full_Name: Rob James Version: 2.2.0 OS: Fedora Core 4 64 Bit Submission from: (NULL) (24.79.225.106) Attempting to run the configure script yields the following inscrutable error: configure: error: --with-readline=yes (default) and headers/libs are not available This occurs at the following point in the processing of the configure script: checking for readline/history.h... no checking

Dear friends, In configuring R 2.4.1 for Solaris 11, using SunStudio 11 compilers, I get the following error. checking readline/history.h usability... no checking readline/history.h presence... no checking for readline/history.h... no checking readline/readline.h usability... no checking readline/readline.h presence... no checking for readline/readline.h... no checking for rl_callback_read_char

Dear Sir/ Madam, I am trying to install R in my AIX-5.3 machine but its giving some error during configuration as given below: checking how to hardcode library paths into programs... immediate checking for cos in -lm... yes checking for sin in -lm... yes checking for dlopen in -ldl... yes checking readline/history.h usability... no checking readline/history.h presence... no checking for

I can't get R-2.5.1 compiled under RedHat EL5 with gcc 4.1.1. Configure failed at the following: checking readline/history.h usability... no checking readline/history.h presence... no checking for readline/history.h... no checking readline/readline.h usability... no checking readline/readline.h presence... no checking for readline/readline.h... no checking for rl_callback_read_char in

Hello, Apologies for the post here. I have read the R-Admin (learned a lot!) and searched the web for days, but still fail at compiling R on my Ultra 20 running solaris 10 x86 1/06. This is the tail of './configure' output: ..... checking for dlopen in -ldl... yes checking readline/history.h usability... no checking readline/history.h presence... no checking for readline/history.h... no

Hello useRs! I'm REALLY having trouble with readline when compiling R. 2.2 from source during ./configure. Here are the last lines of the configure log: checking readline/history.h usability... yes checking readline/history.h presence... yes checking for readline/history.h... yes checking readline/readline.h usability... yes checking readline/readline.h presence... yes checking

Hello! I'm trying to install R-1.9.1a with readline on Suse Linux. As recommended in other posts, I've installed readline and readline-devel: kevin@redtail:~/R-1.9.1> rpm -qa | grep readline readline-devel-32bit-9.0-0 readline-32bit-9.0-0 readline-4.3-207 readline-devel-4.3-207 Then I run configure with readline: ./configure --with-readline The relevant lines are:

Hi, I am trying to compile R-2.1.1 on Solaris10, with the Studio10 compilers. When I try to compile 64bit with CFLAGS="-xarch=amd64" export CFLAGS I get a configure failure on checking for rl_callback_read_char in -lreadline... no checking for history_truncate_file... no configure: error: --with-readline=yes (default) and headers/libs are not available unset CFLAGS and its fine

We've recently "upgraded" a server to solaris 8, and in reinstalling R I've encountered a problem in getting it to recognize the readline library. I have installed readline in what I believe to be the "usual" place: /usr/local/lib with include files in /usr/local/include/readline. But ./configure produces: ragnar.econ.uiuc.edu# grep readline hout checking for

Hello all, I have a new Redhat enterprise system that I'm trying to get set up with all the goodies I need, including R-2.6.1. I got all of the required dependencies including readline. However, configure dies with: configure: error: --with-readline=yes (default) and headers/libs are not available Here are all the lines of output relating to readline: checking readline/history.h

I've built a 64bit version of R 1.9.1 on a solaris 2.9 sparc system. Everything seems quite functional, except that readline produces the following: > configure:21277: checking for rl_callback_read_char in -lreadline > configure:21307: cc -xarch=v9 -o conftest -xO5 -xlibmil -dalign > -I/usr/local/include -L/us > r/local/lib conftest.c -lreadline -ldl -ltermcap -lm >&5

Dear R-help, I'm running into some strange problem compiling R 1.6.2 on Mandrake Linux 9.0. When I do ./configure --enable-R-shlib I get the following in config.log: =========================== configure:11366: checking for rl_callback_read_char in -lreadline configure:11397: gcc -o conftest -g -O2 -L/usr/local/lib conftest.c -lreadline -ldl -lm >&5

This question is about compiling R-1.6.2 from source on a Sparcstation-20 machine running Solaris 7, gcc-2.95.3 and readline-4.2 (both gcc and readline from sunfreeware.com). I searched the r-help archive and the FAQ. The errors seem to be related to the binary readline libraries, and I have /usr/local/lib/libreadline.a,libreadline.so@, and libreadline.so.4. The attached errors are from