similar to: black cluster in salt and pepper image

Dear Sir/Madam, I am using R-Image in an MSc statistics dissertation and have found, in various EBImage manuals a functions - bwimage, which I would like to use, however I can't find it within my version of R. Could you tell me if the function has changed or what I need to do to be able to use it. Many thanks Alice [[alternative HTML version deleted]]

Hi, I am looking for a R package which is capable to process and analysis pictures of tissues (stained) in an automatic way. I had a look on biops and EBImage (Bioconductor) but they are not automatic... Did you already use/know a such package ? Thanks, - Martial _________________________________________________________________ Tchattez en direct en en vidéo avec vos amis !

Hello, Working with Windows 7 in a HP laptop with R-2.10.1 I download and installed ImageMagick-6.3.7.7-Q16-Windows-dll.exe and GTK 2.12.9-win32-2, then downloaded and installed from local file EBImage_3.2.0.zip and I got: > library(EBImage) Loading required package: abind Error in inDL(x, as.logical(local), as.logical(now), ...) : unable to load shared library

Hello all I've just spent a few joyless hours trying to get EBImage to install in R. I'm running Ubuntu (Hardy Heron), fully updated (including R and Imagemagick). EBImage installation seems to work, but when I 'library(EBImage)' I get the following: - - - - Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared library '/home/qilin/R/i486-pc-linux-

Hi group, I've spent half a day trying to figure this out and searched through different forums. I've tried to load EBImage but am getting the following problem: >Error in inDL(x, as.logical(local), as.logical(now), ...) : > cannot initialize ImageMagick >Error: package/namespace load failed for 'EBImage' My path is like this: C:\\Program

Hello, I've been having some trouble working with the aroma package and have realized that it's my ebimage is at the root of the problem. The package builds but during testing it fails because of an undefined symbol as seen below: installing to /usr/local/lib64/R/library/EBImage/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices **

Sorry I meant bwlabel on this message Alice --- On Wed, 24/6/09, aliceduggan@btopenworld.com <aliceduggan@btopenworld.com> wrote: From: aliceduggan@btopenworld.com <aliceduggan@btopenworld.com> Subject: bwimage To: r-help@r-project.org Date: Wednesday, 24 June, 2009, 12:34 PM Dear Sir/Madam, I am using R-Image in an MSc statistics dissertation and have found, in various

Dear all, I have found some serious bugs in the knnFinder package (which supports data structures and algorithms for both exact and approximate nearest neighbor searching in arbitrarily high dimensions) that may trigger segmentation faults. I have fixed them but I had troubles to contact its maintainer Samuel E. Kemp (previously with the University of Glamorgan, UK). Do someone know where I

Dear all, It seems that textConnection() can trigger a segmentation fault. The following script (using two large loops) makes this bug reproducible: for (i in 1:10000) { z=textConnection(NULL,open='w') for (j in 1:100) { write(runif(1)*1e6,file=z) write('\n',file=z) } close(z) } The bug could be reproduced on R-2.6.1, R-2.7.0 and on the latest R-devel

Dear all, Is there a function in R to convert a matrix or a data.frame into an html table? Many thanks, Samuel [[alternative HTML version deleted]]

Hi Is it possible to instead of getting the HTML code written to a file, get it saved as a string in an object instead? Or is there any kind of package that can do this? //Joel -- View this message in context: http://r.789695.n4.nabble.com/Save-R2HTML-as-an-object-instead-of-file-tp3066776p3066776.html Sent from the R help mailing list archive at Nabble.com.

Hi, Maybe this is more a programming questions than a specific R-project question, but maybe there is someone who can point me in the right direction. I have a picture of cirkels which I took with a digital camera. Now I want to use the diameter of the cirkels on the picture for analysis in R. I can use pixmap to import the picture, but how do I find the outside cirkels and calculate the

Hello, I need to do some basic statistics on raster images (tiff or png). I need only an advice where to start, which package is the most appropriate. My search attempts were without success, yet. Many thanks Tomas

Dear all I prepared some image processing routine which depended on package ReadImages. Basically I imported image to R, changed rgb to grayscale, normalised an image made some selections and changed to image by imagematrix. Recently I learned that this package was removed from CRAN and can not be used in R 3.0.0. What options I have now to import image to R, change it to grayscale, make some

I apologize in advance that this question is not specific to R, but I thought some R users may be using this in their work process flow. I would like to be able to have a tool (prefer "scriptable") that will take two images and some pre-written text and put it on an simple webpage. That is, it would look something like the following: |---------------------------------------------|

Here I am again with question I'll feel foolish for asking, when I see the answer. I'm trying to produce a report and here's where I get stuck: How do I get R2HTML to produce the same number format? Particularly remove the decimal places for Par and Sal. Are there better methods to produce this type of report? Thanks, L.A. R version 2.10.0 XP

Hi R, Wanted to check if there are any packages available for getting the (x,y) data points of a graph or a plot, which is in the image format. Say, the plot could be a published report, and I want to get the points of the curve plotted. (I am speaking something related the subject discussed in http://www.uniphiz.com/digitizing.htm) Thanks, Shubha This e-mail may contain

Dear, I'm having some strange problems with Samba. I have shared a linux folder on my samba and have mapped it to a drive letter in Windows XP (I also tried with Windows 2000). When I right click my mapped drive and click on properties to view the free space and capacity, I get all garbage as can be seen from the screenshot at: http://www.nuonsoft.com/temp/samba_free_space.jpg I'm running

Hi, I have an S4 class directly derived from 'array' as shown in the code below (EBImage package of Bioconductor 2.1, devel), it simply contains array adding a couple of slots: setClass ("Image", representation (colormode="integer", filename="character", compression="character", resolution="numeric", features="list" ),

I am out of my league with this question. The following code starts the java imaging program ImageJ from within R, and displays an image (assuming ImageJ is installed on your computer). library(RImageJ) img <- IJ$openImage( file.choose() ) #pick an available .tif file img$show() # make the image object visible # An image is now displayed # find out about the objects involved >