similar to: importing S4 methods using a namespace

In > R.version.string [1] "R Under development (unstable) (2011-12-15 r57901)" section 1.6.6 of 'Writing R Extensions' says Note that exporting methods on a generic in the namespace will also export the generic, and exporting a generic in the namespace will also export its methods. and Note that importMethodsFrom will also import any generics defined in

Dear list, I have another (again possibly boneheaded) puzzle about importing, again encapsulated in a nearly trivial package. (The package is posted at <http://www.math.mcmaster.ca/bolker/misc/coefsumtest_0.001.tar.gz>.) The package consists (only) of the following S3 method definitions: coeftab <- function(object, ...) UseMethod("coeftab",object) coeftab.default <-

Hello everybody, I have a problem with accessing class attributes. I think it might be due to namespace access restrictions or something similar, but I'm unable to figure it out, maybe someone knows the trick how to do it ... I'm trying to extract some information from the summary object for a model fitted using the lmer function from the lme4 package: smry <- summary(lmer(foo

I'm seeing some funny behavior when using methods (the older S3 type) and having variables that start with the same letter. I have a vague recollection of reading something about this once but now can't seem to find anything in the documentation. Any explanation, or a link to the proper documentation, if it does exist, would be appreciated. Thanks, Aaron Rendahl University of

I have a question about what to do in the following situation (please bear with the setup): Package A defines an S4 generic 'foo' and as well as S4 methods for 'foo' and has exportMethods("foo") in its NAMESPACE file. Package B defines another method for 'foo' for class "bar" and has importFrom(A, "foo") exportMethods("foo")

I have encountered an issue which I have been unable to resolve, involving an S3 generic (print) being declared S4 generic in a package, and the method being exported. This all works fine - the problem occurs when I try to import the method to another package. Here is the bit that works fine. ------------- #the .r file for package bar

Dear R devels, let's say I have three packages "pkg1", "pkg2" and "pkg3" which all contain new S4 classes and methods. Where "pkg3" depends on "pkg2" and "pkg2" depends on "pkg1". Moreover, all three packages have namespaces. 1) I use ".onLoad <- function(lib, pkg) require(methods)". Do I also have to

The current version of the methods package now has a namespace. Packages using S4 methods and classes can have NAMESPACE files. New directives can be included in NAMESPACE files to import and export classes and methods. Namespaces allow cleaner definition of the API for packages, and are needed for future improvements to R. NOTE: This is a major revision. In principle, it should be back

The current coxme code has functions that depend on bdsmatrix and others that depend on Matrix, both those pacakges define S4 methods for diag. When loaded, the message appears: replacing previous import ?diag? when loading ?Matrix? Questions: 1. Do I need to worry about this? If so, what can I do about it? I suppose I could add an importFrom directive, but it will be a pain unless there

Rick McNeal and I have been working on building support for sharing ZVOLs as iSCSI targets directly into ZFS. Below is the proposal I''ll be submitting to PSARC. Comments and suggestions are welcome. Adam ---8<--- iSCSI/ZFS Integration A. Overview The goal of this project is to couple ZFS with the iSCSI target in Solaris specifically to make it as easy to create and export ZVOLs

Hi, are there currently any plans to make an iSCSI target created by setting shareiscsi=on on a zvol bindable to a single interface (setting tpgt or acls)? I can cobble something together with ipfilter, but that doesn''t give me enough granularity to say something like: ''host a can see target 1, host c can see targets 2-9'', etc. Also, am I right in thinking without

The international R User Conference useR! 2012 will be held June 12-15 at Vanderbilt University in Nashville, Tennessee, USA, with a pre-conference full-day course offered on June 11. Participants are encouraged to submit a one-page abstract for oral or poster presentation at the conference. Half-day tutorials will be held in the morning and afternoon of June 12th. For tutorials, please

Dear List, I have a problem related to R package creation. I extended the 'show' method to cover a new class with the following lines in the zzz.R file in the R directory while creating an R package. >setClass("rpa", contains="list") >show.rpa <- function (...) {cat("rpa object \n")} The corresponding lines were also added to NAMESPACE file:

Hi, I am posting my question to both storage-discuss and zfs-discuss as I am not quite sure what is causing the messages I am receiving. I have recently migrated my zfs volume from b104 to b134 and upgraded it from zfs version 14 to 22. It consist of two zvol''s ''vol01/zvol01'' and ''vol01/zvol02''. During zpool import I am getting a non-zero exit code,

Hi everyone, I'm sure this has been asked before, but I could not find the right search terms to find it. If I want to see what summarizing a model fit with lm() does, I can write "summary.lm". But what if I want to see what summarizing a model fit with lmer() (lme4 package) does? showMethods(summary) Function: summary (package base) object="ANY"

Dear all, I try to run the example of lmer and get the following error message. > library(lme4) > example(lmer) lmer> (fm1 <- lmer(Reaction ~ Days + (Days | Subject), sleepstudy)) [[1]] Error in get(x, envir, mode, inherits) : variable "as.dpoMatrix" was not found This error message is similar to what I get with other models. It looks like the mer class has a slightly

In the 'doBy' package there is an esticon() function for calculating linear contrasts for various model types. I have defined an S3-method 'esticon.mer()' for 'mer' objects from the lme4 package. Building the package and invoking the method gives: > esticon(fm1, c(1,1)) Confidence interval ( WALD ) level = 0.95 Error in as.integer(x) : cannot coerce type 'S4'

Full_Name: Dale Barr Version: 2.5.1 (patched) OS: Ubuntu linux x86_64 Submission from: (NULL) (138.23.70.108) When RMySQL is loaded in before lme4, the summary() function for lmer objects in the lme4 packages produces the following error: Error in printMer(object) : no slot of name "status" for this object of class "table" When RMySQL is loaded AFTER lme4, however, no such

Dear all, I found a problem with 'lme4'. Basically, once you load the package 'aod' (Analysis of Overdispersed Data), the functions 'lmer' and 'glmer' don't work anymore: library(lme4) (fm1 <- lmer(Reaction ~ Days + (Days|Subject), sleepstudy)) (gm1 <- glmer(cbind(incidence, size - incidence) ~ period + (1 | herd), family = binomial, data

I'm trying to understand how to plot individual growth curve trajectories, with the overall mean trajectory superimposed (preferably in a slightly thicker line, maybe in black) over the individual trajectories. Using the sleepstudy data in lme4, here is the code I have so far: library(lme4) library(lattice) xyplot(Reaction ~ Days, data = sleepstudy, group = Subject, type = 'l')