similar to: Error using update.packages

Dear R-helpers I want to express my respect and thankfulness to all of you. I have ever ask this question about one hour ago. Following Mr. Henrik Bengtsson's advice I re-submit this query here. I just switch from windows xp to Ubuntu linux platform. I am facingtwo problems when I run R in Ubuntu. I need your helps and advice, thanks in advance. 1. R session info

Dear List, After including cluster() option the coxreg (from eha package) produces results slightly different than that of coxph (from survival) in the following time-dependent treatment effect calculation (example is used just to make the point). Will appreciate any explaination / comment. cheers, Ehsan ############################ require(survival) require(eha) data(heart) # create weights

When i tried to install the hunspell package, I got this error message: Error: package ?Rcpp? 0.12.3 was found, but >= 0.12.12 is required by ?hunspell? So I set about installing a new version of Rcpp but I get this message: Error in unloadNamespace(pkg_name) : namespace ?Rcpp? is imported by ?dplyr? so cannot be unloaded How does one get around that? I tried installing Rcpp in a

Your last statement is extremely unlikely to be true. The dplyr package should not be present in a vanilla environment, so there should be no such conflict. -- Sent from my phone. Please excuse my brevity. On February 1, 2018 11:00:01 PM PST, Patrick Connolly <p_connolly at slingshot.co.nz> wrote: >When i tried to install the hunspell package, I got this error >message: >

When checking an R package of mine, I get * checking R files for syntax errors ... WARNING Warning in Sys.setlocale("LC_CTYPE", "en_US") : OS reports request to set locale to "en_US" cannot be honored 'Sys.setlocale' is not used in any of my R functions. What should I do to fix the Warning? I have never seen this before. My locale is "sv_SE",

On Fri, 02-Feb-2018 at 10:25AM +0100, peter dalgaard wrote: |> Or, to avoid accusing you of lying. what you think is "vanilla" |> probably isn't. What exactly did you do? On Unix-likes, I would do |> something like this |> echo 'options(repos=list(CRAN="cran.r-project.org"));install.packages("Rcpp")' | R --vanilla |> |> (or maybe

Or, to avoid accusing you of lying. what you think is "vanilla" probably isn't. What exactly did you do? On Unix-likes, I would do something like this echo 'options(repos=list(CRAN="cran.r-project.org"));install.packages("Rcpp")' | R --vanilla (or maybe https://cloud.r-project.org is better...) -pd > On 2 Feb 2018, at 08:15 , Jeff Newmiller

Just as one more datapoint: I cannot reproduce the segfault, with R 3.5.1 on (L)Ubuntu 18.04. (I use the Ubuntu package, i.e. I did not build from source.) regards Enrico Quoting G?ran Brostr?m <goran.brostrom at umu.se>: > I am running R 3.5.1 on ubuntu 18.04, installed via apt. When I run > R from the bash prompt, I get (reinstalling r-base doesn't help) >

A new version (0.96.3) of the package 'eha' is now on CRAN. Apart from some bug fixes, there are some news. The most noteworthy are: (i) 'plot.Surv' has a few new options, (ii) 'weibreg' now can fit null models (i.e., only scale and shape) and covariates are no longer automatically centered (although this is still the default), (iii) there is a new function,

A few days ago I uploaded to CRAN a new package called 'eha', which stands for 'Event History Analysis'. Its main focus is on proportional hazards modeling in survival analysis, and in that respect eha can be regarded as a complement and an extension to the 'survival' package. In fact eha requires survival. Eha contains three functions for proportional hazards

A few days ago I uploaded to CRAN a new package called 'eha', which stands for 'Event History Analysis'. Its main focus is on proportional hazards modeling in survival analysis, and in that respect eha can be regarded as a complement and an extension to the 'survival' package. In fact eha requires survival. Eha contains three functions for proportional hazards

I have a plot similar to the following library(lattice) stripplot(1:15, rep(1:3, each=5)) In order to save space for a presentation, I would like to have horizontal strips instead of vertical. The argument 'horiz' turns the arguments around, but not the plot. The documentation for 'stripplot' ('xyplot'), 'panel.stripplot' and the FAQ do not seem to provide

On Sat, 7 Jul 2018 at 07:52, G?ran Brostr?m <goran.brostrom at umu.se> wrote: > > > On 2018-07-07 06:27, Dirk Eddelbuettel wrote: > > > > On 7 July 2018 at 00:51, G?ran Brostr?m wrote: > > | My repo is > > | > > | deb https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/ > > | > > | Is that wrong? > > > > That repo will

Hi list! I'm getting an error message when trying to fit an accelerated failure time parametric model using the aftreg() function from package eha: > Error in optim(beta, Fmin, method = "BFGS", control = list(trace = > as.integer(printlevel)), : > non-finite finite-difference value [2] This only happens when adding four specific covariates at the same time in the

On 2019-09-11 22:16, Avraham Adler wrote: > Can you write a small C function that calls LAPACK call that fro your > Fortran code? Yes, an extra step but maybe less traumatic than rewriting > parts of LAPACK directly. Yes, I know how to do that, but I find it somewhat bizarre that it is impossible to call a Fortran subroutine from Fortran. And rewriting 'dgemv' was simple:

I am running R 3.5.1 on ubuntu 18.04, installed via apt. When I run R from the bash prompt, I get (reinstalling r-base doesn't help) > devtools::install_github("goranbrostrom/eha", build_vignettes = TRUE) *** caught segfault *** address 0x68456, cause 'memory not mapped' Traceback: 1: dyn.load(file, DLLpath = DLLpath, ...) 2: library.dynam(lib, package,

When I try 'install-packages' (from menu) in R-1.7.0 (Windows), I get > install.packages(choose.files('',filters=Filters[c('zip','All'),]), .libPaths()[1], CRAN = NULL) Error in file(file, "r") : unable to open connection In addition: Warning message: cannot open file `eha060/DESCRIPTION' > but it works with R-1.6.2. It also works if I

I have tried what I proposed in a virtual Kubuntu 18.04 which uses gfortran 7.4. I used the latest development version of R. It worked just as on macOS. Berend > On 11 Sep 2019, at 22:07, G?ran Brostr?m <goran.brostrom at umu.se> wrote: > > Berend, > > I do not think this works with gfortran 7+. I am calling the BLAS subroutine dgemv from Fortran code in my package eha,

Can you write a small C function that calls LAPACK call that fro your Fortran code? Yes, an extra step but maybe less traumatic than rewriting parts of LAPACK directly. Avi On Wed, Sep 11, 2019 at 4:08 PM G?ran Brostr?m <goran.brostrom at umu.se> wrote: > Berend, > > I do not think this works with gfortran 7+. I am calling the BLAS > subroutine dgemv from Fortran code in my

Now I try to add some C and Fortan code to my package, so the NAMESPACE file is useDynLib(eha) importFrom(survival, Surv) export(mlreg.fit, risksets) but I get ..... * checking R files for library.dynam ... OK * checking S3 generic/method consistency ... WARNING Error in .try_quietly({ : Error in library(package, lib.loc = lib.loc, character.only = TRUE, verbose = FALSE) :