similar to: permutation analysis with randomly chosen subsets of a matrix

Displaying 20 results from an estimated 1000 matches similar to: "permutation analysis with randomly chosen subsets of a matrix"

2010 Feb 12
5
logical operations with lists
Sorry, maybe it's easy but I haven't found anything useful: how can I obtain a list C that contains all the members in the list B that are not in list A? This are lists of nanes, not numbers! Thank you Gabriele Zoppoli, MD Ph.D. Fellow, Experimental and Clinical Oncology and Hematology, University of Genova, Genova, Italy Guest Researcher, LMP, NCI, NIH, Bethesda MD Work: 301-451-8575
2010 Apr 22
6
simple question
Hi how can I find, in a vector of characters, which is the most frequent one? Thanks Gabriele Zoppoli, MD Ph.D. Fellow, Experimental and Clinical Oncology and Hematology, University of Genova, Genova, Italy Guest Researcher, LMP, NCI, NIH, Bethesda MD Work: 301-451-8575 Mobile: 301-204-5642 Email: zoppolig at mail.nih.gov
2010 May 28
3
how to create automatically names for vectors in a loop?
Hi, I want to generate a number of vectors and store them with different names, like this: x=1 while (x<100) { vector#x# = rnorm(100) x=x+1 } where each vector has, at its hand, instead of #x# a number which goes from 1 to 99. How can I do this? Thanks Gabriele Zoppoli, MD Ph.D. Fellow, Experimental and Clinical Oncology and Hematology, University of Genova, Genova, Italy Guest
2010 Jan 29
2
question about transpose
Hi all, if I transpose a matrix with t(data), the newly created colums do not appear to have the first row as header. How can I do to have all the newly created columns have their first row as a header? Thanks Gabriele Zoppoli, MD Ph.D. Fellow, Experimental and Clinical Oncology and Hematology, University of Genova, Genova, Italy Guest Researcher, LMP, NCI, NIH, Bethesda MD Work: 301-451-8575
2010 Feb 13
3
how to do calculations in data matrices?
Please give me just a reference where I can find something useful. In summary, I need to : - find the median of each row of a matrix - create a new matrix with each value in the first matrix divided by the median of its row - if a value "a" in the second matrix is < 1, I need to substitute it with 1/a I know that for some of you it must be overeasy, but I swear I googled for two
2010 Sep 03
6
how can I plot bar plots with all the bars (negative and positive) in the same direction????
Dear r-help mailing list, this seems stupid, but I actually don't find the solution: if I have a vector of numbers x of length n, ranging, say, from -3 to 4, if I do barplot (x) all the values below 0 go downwards, and all the positive values go upward. How can I make them all begin from the minimum pointing upwards? Thanks! Gabriele Zoppoli, MD Ph.D. Fellow, Experimental and Clinical
2010 Jan 29
1
how to create a histogram from a matrix?
Hi, I'm trying to create a frequency histogram for all the values in a table, but when I try to do so, an error is returned, saying that I cannot create a histogram with an obkect of that class. Here's what I do: >library(lattice) >table<-read.table("C:/.../table",header=TRUE,sep="\t") >histogram(table) Please help me!!! Thanks Gabriele Zoppoli, MD
2010 May 08
1
memory limit
Hi, when I try to import a microarray CEL batch, I get this error message: > myAB <- ReadAffy () Error in .Call("read_abatch", filenames, rm.mask, rm.outliers, rm.extra, : cannot allocate vector of length 1287151200 which, assuming the value is in bites, is below my RAM values (3 Gb recognized by Windows). The isse is, when I try to do memory.limit (size = 3000 ) the
2010 Feb 27
1
help with Gantt chart
Hi, I don't know to solve this error that is returned, even though I understand it: library(plotrix) Ymd.format<-"%Y/%m/%d" gantt.info<-list(labels= c("First task","Second task (1st part)","Third task (1st part)","Second task (2nd part)","Third task (2nd part)", "Fourt task","Fifth task","Sixth
2010 Jan 29
1
help on drawing right colors within a grouped xyplot (Lattice)
Hi, I've lost my mind on it... I have to scatterplot two vectors, grouped by a third variable, with two different dimensions according to whether each cell line in the plot is sensitive or resistant to a given drug, and with a different color for each of 9 tissues of origin. Here's what I've done:
2010 Apr 22
1
cell-based high-throughput chemical compound screens package?
Hi I'm looking for a package to perform quality control, normalization and analysis of high throughput cell-base chemical screens. I know that the cellHTS2 package provides this for siRNA screens. Does anybody know if something like what I'm looking for exists? Thank you! Gabriele Zoppoli, MD Ph.D. Fellow, Experimental and Clinical Oncology and Hematology, University of Genova,
2010 May 23
3
"order" issue
Hi everybody, this is a real dummy thing. I sorted a matrix based on a given column, and what I get is right, until it comes to columns of negative and positive values; than, "order" orders everything from max to min in the negative values, and then AGAIN from max to min in the positive values!!! Why isn't everything order from max to min, and that's it? Thank you!!! Attached
2010 Jan 31
2
help on Venn's diagram
Hello! I have this problem: I want to create a Venn's diagram with three lists of genes'names. The first is all the genome, the second a subset of it comprising all mitochondrial genes, and the third including all genes that correlate with a given gene. This is what I do: > library(gplots) > A<-read.delim("F:/.../mito genes just names.txt") >
2010 Apr 07
0
exporting rotating plot into Powepoint
Hi, I need to export a rotating plot like the one generated from the following function into a PPT slide or something that can be viewed by reviewers of a journal: library(np) library(datasets) data(faithful) f <- npudens(~eruptions+waiting,data=faithful) plot(f,view="rotate",neval=100,phi=30,main="",xtrim=-0.2) Thanks! Gabriele Zoppoli, MD Ph.D. Fellow,
2007 Aug 23
6
mongrel + pound + ziya problems
Hi, i''m using to ziya to display some graph. If i use it running mongrel as single instance all work good (very slow but work). If i try to use it with pound as htto proxy ziya charts wait forever for data...that never arrive. If i check the mongrel log it seemes to make queries on the database and retrieve data,but nothin appera. Anyone have an idea on how i can solve this problem?
2005 Feb 15
2
Asterisk Integration with ALCATEL 4400
Does anyone have any input into integrating asterisk with a alcatel 4400 PBX. Acording to what i've found is that Alcatel uses R2 for E1 -- regards Vikram (http://www.vicramresearch.com)
2005 May 31
7
Tools for effectively manage Asterisk
Hallo, we have started playing with asterisk about one month ago, and we do like very much what we are experiencing. Now we would like to take some step further towards "standardizing" installed modules, functionalities, tools etc. The "wall" we are facing now is: choosing the right tool for * management. We tried AMP, very powerful but incomplete (CAPI is very important to
2008 Jul 10
5
rounding
Hi, Round(0.55,1)=0.5 Round(2.55,1)=2.6 Can this be right? Thanks, Ed [[alternative HTML version deleted]]
2005 May 10
3
[LLVMdev] llvm fits in the national compiler infrastructure (nci)?
national compiler infrastructure - http://www.cs.virginia.edu/nci/ is there any on-going efforts to integrate llvm with other nci projects?
2001 Oct 12
0
samba for aix 4.1.4
Genova 12/10/2001 I need samba for aix 4.1.4 . Can your tell me where I can find it ? Tanks Adriano Bolla e-mail adriano.bolla@loran-thera.it -------------- next part -------------- HTML attachment scrubbed and removed