similar to: how to specify the order of panels with xyplot

Hi, Am am plotting aggregated frequency data (extracted from an RDBMS) relating to DNA sequence features for each of the human chromosomes as described in the table chromosomes below (the frequency data is in a table 'hits' that has a value (or not) for each of a set of bins across each chromosome). I would like to mark the extent of the chromosome (according to the length value in

Through converting a miRNAs file from FASTA to character format I get a vector which looks like the following: > nml [1] "hsa-let-7a MIMAT0000062 Homo sapiens let-7a" [2] "hsa-let-7b MIMAT0000063 Homo sapiens let-7b" [3] "hsa-let-7c MIMAT0000064 Homo sapiens let-7c" [4] "hsa-let-7d MIMAT0000065 Homo sapiens

I have the following vector of strings (shown only the first 3 elements) > desc[1:3] [1] "hsa-let-7a MIMAT0000062 Homo sapiens let-7a" [2] "hsa-let-7a* MIMAT0004481 Homo sapiens let-7a*" [3] "hsa-let-7a-2* MIMAT0010195 Homo sapiens let-7a-2*" > is.vector(desc) [1] TRUE > A <- unlist(strsplit(desc[1:3], " ")) > A [1]

Dear All, I need to fetch GO ontologies for Homo sapiens with their mappings to corresponding Uniprot identifiers. I would be using this information to compare result from a clustering algorithm with existing protein complexes. This would be a test to check how the clustering algorithm accurately captures GO terms with respect to the known protein complexes. Can anyone suggest a simple workflow

Hi ALL, I have very simple question regarding pattern matching. Could anyone tell me how to I can use R to retrieve string pattern from text file. for example my file contain following information SpeciesCommon=(Human);SpeciesScientific=(Homo sapiens);ReactiveCentres=(N,C,C,C,+ H,O,C,C,C,C,O,H);BondInvolved=(C-H);EzCatDBID=(S00343);BondFormed=(O-H,O-H);Bond+

Hi R-users, I have a data frame like this: photographer category picture points Hannu kalat limamikko 1 Teemu kalat verkkovaja 3 Hate kalat munat puoliks padassa 6 Hannu kalat isokala 8 Teemu kasvit, sienet ja muut eliöt harppi 2 Hate kasvit, sienet ja muut eliöt pyynikki 2 Petteri kasvit, sienet ja muut eliöt harmaaleppä 5 Lauri kasvit, sienet ja muut eliöt lumipuu 9 Teemu linnut kainostelua 1

On 13 October 2015 at 16:41, Rafael Espíndola <llvm-dev at lists.llvm.org> wrote: >> - *Be welcoming.* We strive to be a community that welcomes and supports >> people of all backgrounds and identities. This includes, but is not limited >> to members of any race, ethnicity, culture, national origin, colour, >> immigration status, social and economic class, educational

Hi R-users, I have a dataset like this: kuvaaja kuva yhteispisteet Hannu isokala 8 Hannu kaapin alta löytynyt 2 Hannu kaapin alta löytynyt 2 8 Hannu limamikko 1 Hannu maukasta marmeladia 8 Hannu skrinnareita 4 Hate madekoukkujen suojelupyhimys 3 Hate matka aikaan joka ei enää palaa 3 Hate munat puoliks padassa 6 Hate pyynikki 2 Hate vailla armeerausta 2

Dear all, I have data.frame object in R. I want to export it in tab-delimited file with several lines of header initiated with comment sign (#). I do not know how to do that in R. Could you please give helps on this problem? Thanks in advance. Best, Jian-Feng, ################################################################## The lines I want to write in the header lines look like, with words

Hi all, I have samba server 2.2.8a to act as a PDC on a mixed WinXP/Win2k/WinNT network. I joined all my workstations to the domain with no problem... And users can login into the domain and access their folders/printers, BUT!!! Every now and then they cannot log in getting error message that domain controller cannot be found.... I'm trying to track the problem down :-) When I went thru

Hello R-user community! I am running R 2.7.0 on a Power Book (Tiger). (I am still R and statistics beginner) I did the following : pdf("InLnegthMaxHomogeneity.pdf") boxplot(inflorescence_length_Max~Sex, main="Bartletts Homogeneity for inflorescence length",data=FemMal_Sex) Homo<-bartlett.test(FemMal_Sex$inflorescence_length_Max,FemMal_Sex$Sex) text( 2, 500,

Dear R Help Members, I need to draw a pie chart for someone and there are 3 small slices in it identifying different species, all 0.7%, who’s labels overlap so you cannot read them. Is there a way to have only 1 label the three slices, so as to merge the three labels into one without merging the 3 slices? Alternatively, is there a way to extend the pointing lines, so that they could be different

On Tue, Oct 13, 2015 at 12:35:07PM -0400, Aaron Ballman via llvm-dev wrote: > On Tue, Oct 13, 2015 at 12:21 PM, Renato Golin via llvm-dev > <llvm-dev at lists.llvm.org> wrote: > > On 13 October 2015 at 16:41, Rafael Espíndola <llvm-dev at lists.llvm.org> wrote: > >>> - *Be welcoming.* We strive to be a community that welcomes and supports > >>>

Hi everyone, I''m using a svn pre-commit hook to check manifests for syntax errors. I''ve recently upgraded puppet from 0.22.4 to 0.23.2 and the hook stopped working. I use the following command to parse .pp files: /usr/local/bin/puppet --confdir=/tmp --vardir=/tmp --parseonly --ignoreimport /tmp/$$.pp Now, I make a decision based on the exit code. If 0 then commit, else exit

Hello, I've read in a data file as a frame and now I'd like the columns to be rows and the rows to be columns. What's the easiest way to do this in R? > class(d) [1] "data.frame" > rownames(d) [1] "98x101" "40x98" "30x40" "0x30" > colnames(d) [1] "H..sapiens" "C..elegans"

Dear all, I have a data which is in text file and i would like to import the data to R. From the manual, i?ve found the read.table command function is the most appropriate but when i wrote the command an error had occur. It say ?Error in read.table"C:/Users/user/Documents/cfa-1.txt", header = T, sep = "\t",skip=10) :more columns than column names?. Please help me with this as

Hello, I've just started R, and I'm getting a bit mad using it. I've managed to produce a barplot with the labels for the ytick marks placed horizontally (perpendicular to the y-axis) usiing par(las=1). The problem is that most of my labels are in part beyond the plotting area because they are rather long (e.g. "H. sapiens", "D. melanogaster" ...). What is the

I deal with a huge amount of Biology data stored in different databases. The databases belongig to Bioconductor organization can be accessed through Bioconductor packages. Unluckily some useful data is stored in databases like, for instance, miRDB, miRecords, etc ... which offer just an interactive HTML interface. See for instance http://mirdb.org/cgi-bin/search.cgi,

I have 3 variables relating to the successful introductions of species to 95 different areas: introduction frequency; number of successes pre 1906; number of successes post 1906 The data are not normal, nor homo-skedatic, so I am using non-parametric statistics. I have calculated Kendall's tau between both introduction & successes pre 1906 (tau=0.3903) and introduction & successes

I was having a problem with my Samba PDC with LDAP backend. Some of my workstations (W2kSP4) couln't log into the domain. I removed the machines from the domain, changed the name, created a new machine-account, but I still can't add the machine to the domain. smbclient -L localhost Enter root's password: Anonymous login successful Domain=[DCHOMO] OS=[Unix]