similar to: a minor bug in "venn" from gplots?

Hi list, This is probably too much to ask, but I'm wondering if there is a ready-to-use function somewhere that allows me to color one area of a venn diagram (e.g. the intersection of two sets)? Thanks! ...Tao

Dear all I am trying to learn R I was trying to calculate standard deviation here are the commands and outputs in R > sd(Ht_cm[type=='SD'])[1] 3.283605> sd(Ht_cm[from_treeline=='above'])[1] 16.83289> sd(Ht_cm[type=='SD'][from_treeline=='above'])[1] NA> the problem is that, i could not understand why the third command could not give any result.

After a lot of effort I developed the following function to compute the bounding ellipse (also known a as minimum volume enclosing ellipsoid) for any set of points. This script is limited to two dimensions, but I believe with minor modification the algorithm should work for 3 or more dimensions. It seems to work well (although I don't know if can be optimized to run faster) and

The mvee() function is intended to be released under the BSD license. Copyright (c) 2009, Nima Moshtagh Copyright (c) 2011, Andy Lyons All rights reserved. http://www.opensource.org/licenses/bsd-license.php Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: Redistributions of source code must

Hi, I found a package "venn" to create a venn diagram. I need to color the circles. Can any one suggest me how to do using "Venn". -- View this message in context: http://r.789695.n4.nabble.com/venn-diagram-color-using-venn-tp3664528p3664528.html Sent from the R help mailing list archive at Nabble.com.

Dear all, I have an issue trying to install new packages (have tried with RODBC_1.3-1, gplots_2.6.1, gtools_2.7.4 packages) and get the same error message : "Error in library(gplots) : there is no package called 'gplots'" Only clue I have found so far on the Web is related to Perl (Perl modules are installed on my computer, but which one is related to gplots if any ?); no

Hi there, Is there a way to control the circle diameter in venn.diagram function of VennDiagram package? Thanks Mike [[alternative HTML version deleted]]

Hello there, Does anyone know how to plot venn diagrams in R? Ive searched the mail archive lists but to no avail. Regards, Wayne Jones KSS Ltd Seventh Floor St James's Buildings 79 Oxford Street Manchester M1 6SS England Company Registration Number 2800886 Tel: +44 (0) 161 228 0040 Fax: +44 (0) 161 236 6305 mailto:kssg@kssg.com http://www.kssg.com The information in this

Dear R-users I want to save a list with characters a point plot and a Venn diagram in a single pdf page. I am successful to do this when I use a character list and two point plots. However when I try to replace the first point plots with my Venn diagram (built with Vennerable package, compute.Venn() and plot.Venn()) the Venn plot will not position at the right place in the pdf. I guess there

Hi all, I am trying to plot a venn diagram using vennDiagram in limma package, but I have no idea how to have it colorful such as the color one created by the following website: http://www.pangloss.com/seidel/Protocols/venn.cgi. Any one has any advice? Thanks, D.

I need to generate venn diagrams for some of my data. I am using the venn library. Is there a function that generates the ids and attributes that I can pass on to venn Library(venn) ids <- c(1,1,1,2,2,2,3,3,3,4,4,5,5,5,6,6,7,8,9,10) attributes <-

Hello, In limmaGUI, after running a linear model for a single gene & time point (mutant vs control), the venn-diagram for differentially expressed genes with a p-value cut-off gives a different number than the top-table with the same cut-off (2600 vs. 791). I have seen the same thing happen before for multiple time points (when the venn-diagram is more relevant) Any ideas what is going on?

Hello, I am plotting data as a venn diagram but would like to be able to control how it is plotted like a lattice object. Right now, it plots right away. I would like to name it and then plot at will. I thought to convert the whole thing to a PostScript file then get it back into R via grImport, but surely (please!) there must be a less roundabout way to do this. Any help is appreciated. Here

Dear all, I have a set of five datasets with string, for which I need to draw the venn diagram. there are tools available to draw venn diagram online, but limited to three sets. I can also generate venn for three from limma package, but do not know how to proceed with five subsets. Help me in drawing the same any script . Thank you Khush [[alternative HTML version deleted]]

Hi, I am a beginner with "R" and found a package "venn" to create a venn diagram. I tried this “venn” function to generate venn diagram, but i need *Percentage values* instead of counts(frequency) in the oval(circles) of Venn diagram. Output : http://r.789695.n4.nabble.com/file/n3664380/output.docx output.docx I have written have the code as below : # venn diagram for more

In http://finzi.psych.upenn.edu/R/Rhelp02a/archive/14637.html some rudimentary R functions were given for drawing proportional area venn diagrams with area of each intersection ~ the count in a 2 x 2 x 2 table. I'm interested in this, for another application: showing the correlations among Y, X1, X2 using area ~ r^2 of each pair (sometimes called a Ballantine diagram). Before I attempt

I was wondering if you could lend me some advice in using the Vennerable package. I am having trouble creating the right sort of Venn function output. I have "TRUE" and "FALSE"/NA str(mutset) 'data.frame': 2310 obs. of 3 variables: $ TestResult.1 : chr NA NA NA NA ... $ TestResult.2 :chr NA NA NA NA... $ TestResult.3

Dear r-helpers, Here I would like to have your kind helps on generating Venn diagram. There are some packages within R on this task, like venneuler, VennDiagram, vennerable. But, vennerable can not be installed on my Mac book. It seems VennDiagram can not work on my data. And, venneuler may have generated a wrong Venn diagram to me. Do you have any experience/expertise on those Venn diagram?

Hi, I am using venn diagram function in AMDA to plot the venn diagram. But it seems in this function, it can only plot 3 or less vectors. Is there a way to plot the venn diagram with more than 3 vectors? Please help. Thanks. Z --------------------------------- [[alternative HTML version deleted]]

Hi R users, I am wondering if it there is any R's function helping integrate venn diagram and pie chart to compare two related datasets. I know the package limma(bioconductor) has something built-in for making venn diagram, but I guess it would be very painful to use line and text to specify the proportions in the fashion of pie chart . Thanks in advance, Kevin Chang -- View this