similar to: Optional libraries (libtiff, etc) not found

All, the MacOSX binary build of the biOps package is broken on cran, so I am trying to compile from source. I am very close; the trick is apparently that this package depends on fftw3, libjpeg and libtiff. My fftw3 is in /usr/local/, but my libjpeg and libtiff are in /opt/local/ since i got them through macports. In general, I'd like to keep as many of my third-party libraries as I can in the

version.string R version 2.15.2 (2012-10-26) I am trying to install biOps on MacOS X 10.8.2 First, I have tiff, fftw-3, jpeg and set paths like cd /usr/include sudo ln -s /usr/local/include/fftw3.h for x in /usr/local/include/j*.h; do sudo ln -s $x; done for x in /usr/local/include/tiff*.h; do sudo ln -s $x; done cd /usr/lib for x in /usr/local/lib/libfftw3.*; do sudo ln -s $x; done for x in

Hi, I installed biOps on my XP, and installed the required dll packages, jpeg62.dll, libfftw3-3.dll, and libtiff3.dll, as suggested by this forum. Then it worked perfectly for about one week till this afternoon. When I tried to load biOps again, I got the following error message again Error in inDL(x, as.logical(local), as.logical(now), ...) : unable to load shared library

I have tried several times to load biOps package after reading the posts in this archive regarding the necessity of placing these two libs in the PATH (libjpeg62.dll and libtiff3.dll). I have tried locating the libs in several directories that should have worked, but I still get the following message. ------------------ Error in inDL(x, as.logical(local), as.logical(now), ...) :

I'm running R 2.6.1 on a WXP machine. When I do the following I get an error message. > library(biOps) Error in dyn.load(file, ...) : unable to load shared library 'C:/PROGRA~1/R/R-26~1.1/library/biOps/libs/biOps.dll': LoadLibrary failure: The specified module could not be found. Error: package/namespace load failed for 'biOps' Please help, or comments about what

Dear R people, I am trying to install rimage using install.packages("rimage") but am receiving the following errors despite having FFTW installed. I would appreciate any help to get this fixed. checking fftw.h usability... no checking fftw.h presence... no checking for fftw.h... no configure: error: Sorry, can't find fftw header ERROR: configuration failed for package

Hello, I'm running R with windows. Could anybody help me how to install the package biOps (http://cran.mirroring.de/src/contrib/Descriptions/biOps.html) ? I cannot find it at any mirror provided by the GUI; I just found it as "tar.gz" which cannot be installed with the installation method... Maybe, I simply do something wrong? Thanks for any hint! Antje

Buenas dias a tod@s, Quisiera saber si alguien tiene experiencia con el procesamiento de imágenes (en formatos JPEG o PNG) en R y la búsqueda de similitudes / diferencias entre ellas. La idea de lo que me gustaría hacer es: tomar una imagen, cargarla en R y luego analizar su estructura. Para las dos primeras tareas, la libreria ReadImages en CRAN me ha sido útil, pero para la segunda, hasta

Hi, I am looking for a R package which is capable to process and analysis pictures of tissues (stained) in an automatic way. I had a look on biops and EBImage (Bioconductor) but they are not automatic... Did you already use/know a such package ? Thanks, - Martial _________________________________________________________________ Tchattez en direct en en vidéo avec vos amis !

Hi, Attached is a patch which enables FFTW3 to be used by libspeexdsp. Using SSE, the FFT code is more than twice as fast, and it's 50% faster even without SSE. To enable the library, you'll need to call configure with '--with-gpl-fftw3'. Based on the benchmarking we did, this also changes the default FFT to smallft for floating point implementations when not using FFTW3.

Hello everyone,  I'm working in a project to create an special analysis about visualization in some animals and its behaviour, through checking eye movement. The point is this is very important to get data from the image as a resume of what this animal sees. I think an RGB histogram like photoshop does, but I need to get the data from this histogram analysis and I was wondering about using R

Hi all, Am I using the correct syntax to set a custom R_LIBS when running R CMD INSTALL from the command line? I get: R_LIBS=/Users/hadley/R-dev R CMD INSTALL aL3xa-rapport-08e68ca/ # Desktop : R_LIBS=/Users/hadley/R-dev R CMD INSTALL aL3xa-rapport-08e68ca/ # * installing to library ?/Users/hadley/R? # ERROR: dependency ?ascii? is not available for package ?rapport? But: ls

I am not sure if I should ask this question in this list. But I'll try. Currently I am trying to analyze images using EBImage and biOps. One of the features that I need to extract from various images is the color spectrum, namely, which colors each image consists of. So, each image hopefully can be converted into some sort of color histogram so that color ingredients are easily comparable

Hi, I installed biOps on my XP, and installed the required dll packages, jpeg62.dll, libfftw3-3.dll, and libtiff3.dll, as suggested. Then it worked perfectly for about one week till this afternoon. When I tried to load biOps again, I got the following error message again Error in inDL(x, as.logical(local), as.logical(now), ...) : unable to load shared library

Hi folks: I am trying to install the package "rimage" in R 1.8.0 on an Alpha Linux box. "R CMD INSTALL rimage_0.5-1.tar.gz" fails with the following: ... ... checking for stdint.h... yes checking for unistd.h... yes checking fftw.h usability... yes checking fftw.h presence... yes checking for fftw.h... yes checking jpeglib.h usability... yes checking jpeglib.h presence...

Hello, I experienced a compiler error when I tried to compile the latest version of R i.e. R4.0.2 making iosupport.d from iosupport.c making lapack.d from lapack.c making list.d from list.c making localecharset.d from localecharset.c grep.c(74): catastrophic error: cannot open source file "pcre2.h" # include<pcre2.h> (The pcre2.h header file is actually present!) I used the

Dear All, I found this nice example of PCA application on the web http://www.r-bloggers.com/principal-components-and-image-reconstruction/ and wanted to reproduce the results for myself. I installed biOps the usual way and got the message *package 'biOps' successfully unpacked and MD5 sums checked* but when loading the package, I get *Error in inDL(x, as.logical(local),

Small update. This makes --without-gpl-fftw3 do the expected, and also allow --with-gpl-fftw3=/path/to/fftw3 for alternate installs. It also zeroes the imaginary of the nyquist element; it works without it, but it's recommended to do. -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: speex-fftw3-fix.diff Url:

Dear folks, I'm testing a downsized R build - in features and obviously sizes - for a "modern" flat deployment (eg. like python virtualenv, just to name one). Questions: 1) Is flat style possible? 2) With this setup, R and packages can be installed/updated? 3) The directory can be easy renamed or moved? ------------------------------------------------------------------- I

Hope I am not sounding too much like a broken record - as far as 64-bit build on AIX is concerned. ** Short - 32-bit builds complete normally, 64-bit builds stop at "installing 'sysdata.rda'" with message: Error: Line starting 'Package: tools ...' is malformed! Execution halted *** Longer... I could file a bug - Importance, showstopper - but I would prefer to better