similar to: glm analysis repeated for 900 variables

I am trying to replace values of a vector (consisting of 15 values) by a value that is related to a matching value in a dataset (consisting of 17 rows). Here's an example The vector: v <- c(f,a,e,d,m,o,e,f,i,n,e,i,b,a,o) The dataset's columns consist of the following values d[,1] <- c(a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,p,q) d[,2] <- 1:17 So I want to end up with a vector that

Dear R-experts, My problem is how to handle a 10GB data file containing genotype data. The file is in a particular format (Illumina final report) and needs to be altered and merged with phenotype data for further analysis. PERL seems to be an frequently used solution for this type of work, however I am inclined to think it should be doable with R. How do I open a text-file, line by line,

Hi, We are in the process of testing a migration of our current setup which contains Samba 4 as Classic DC with LDAP backend, Isilon OneFS bulk storage serving NFS/SMB shares and Windows/Mac/Linux clients to a more modern Samba 4 AD. We need to migrate to Samba AD because of Windows 10 and macos 10.13.x (and for several other reasons). But we run into an issue with authenticating the clients

Hi, we now have an old Windows NT4.0 domain served by Samba 4.2.x (using Samba and LDAP) and want to move to Windows AD. The reason we need to do that is because of the clients (Windows 10 and MacOS) and because of a third party device which does not want to talk to Samba AD (Isilon OneFS). I did a 'classicupgrade' to Samba AD from our Samba/LDAP config and then I use this guide :

Hi, this has nothing to do with CentOS but with your router which does not support using the public IP from inside your network (which is quite common). If the port is open on your router when you access it from another public IP then all is well. Regards, Michel On Fri, 2018-09-14 at 09:43 +0200, Marcin Trendota wrote: > W dniu 13.09.2018 o 22:19, Oleg Cherkasov pisze: > > On 13.

W dniu 13.09.2018 o?22:19, Oleg Cherkasov pisze: > On 13. sep. 2018 21:02, Marcin Trendota wrote: >> >> There is nginx on port 80. >> I've turned off SELinux for testing purposes. >> >> [root at chamber ~]# nmap chamber -p80 >> [...] >> PORT?? STATE SERVICE >> 80/tcp open? http >> >> [root at chamber ~]# nmap -p80

Dear R-community, I would like to plot the numbers at risk for the different causes of failure at specific timepoints below a cumulative incidence function plot (plot.cuminc-function, cmprsk-package). For a Kaplan-Meier plot I know this is possible with the n.risk-argument in the survplot-function (rms-package), but to my knowledge no such readily-available functions are available for competing

Dear R users, For the purpose of validating a prediction model using validate() from the rms package, I am running into some trouble with using the fastbw() function breaking up natural groups of variables. Is there any way I can specify to keep certain variable together? In particular, if interactions are included I would also like to keep the main effects in the model. Another example is a

Hi, the first thing that comes to mind, did you set ip_forward to enable in /etc/sysctl.conf ? net.ipv4.ip_forward = 1 Should explain why you IP on the bridge works but not on the vms. Regards, Michel On Wed, 2020-06-17 at 09:43 -0400, Lamar Owen wrote: > As part of my initial KVM host on C8 deployment, I decided to set up > some HA features on the new host, specifically NIC

Hi, I'm looking for an efficient code that will enable me to reshuffle data (phenotype) for certain number of individuals and creating a loop that will randomly simulate it for 10000 times *(permutation)*. I also need to find how I keep the information (p value for each SNP) gathered for all the 10000 iterations. My data set looks like this (n=500): Individual # Phenotype SNP1 SNP2

As part of my initial KVM host on C8 deployment, I decided to set up some HA features on the new host, specifically NIC teaming. Teaming seems to be bond++ of a sort, so I thought I would at least try it.? So here's the scenario: 1.) Server with two gigabit ethernet ports, two Cisco switches. 2.) During install, used the 'Server with GUI' group and added the virtualization

Hi list, I am probably overlooking something, but can not figure out what is going on nor can I find something through google. I just converted a Samba 4 PDC to Samba 4 AD DC (using the samba provided tools). I hooked up a Linux laptop to the network configure winbind, joined the domain and am able to login with my credentials from Samba AD. However I can not seem to get it working on the

Hello, I am performing a meta-analysis using the metafor package. My data are proportions and I used the Freeman Tukey double arcine (FT) transformation to fit the random effects model. Now I want to create a forest plot with my estimates backtransformed to the original scale of proportions. Can this be done? Regards, Patricia

Hello all, I'm having difficulty with setting up a mixed model using lme in the nlme package. To summarize my study, I am testing for effects of ornamentation on foraging behavior of wolf spiders. I tested spiders at two different ages (penultimate vs. mature) and of two different phenotypes (one species tested lacks ornamentation throughout life [non-ornamented males] while the other

In our smallest office, we have a Dell CentOS 7 system, a Windows system and an HP 8610 printer, all hard-wire Ethernet connected with a Linksys router. The router provides Internet connection. All of the network-connected systems get their IP address from the router at power up. Successful network connection of the printer at power up has recently started taking much longer than usual.? The

Hi, On Mon, 2019-03-25 at 12:28 +0000, Rowland Penny via samba wrote: > On Mon, 25 Mar 2019 11:24:03 +0000 > "Deventer-2, M.S.J. van via samba" <samba at lists.samba.org> wrote: > > > Hi, > > > > we now have an old Windows NT4.0 domain served by Samba 4.2.x > > (using > > Samba and LDAP) and want to move to Windows AD. > > The reason

Hi, I am new in R and stumbled on a problem my (more experienced) friends can not help with with. Why isnt this code working? The function is working, also with the loop and the graph appears, only when I build another loop around it (for different values of p) , R stays in a loop? Can't it take more then 2 loops in one program? powerb<-function(x,sp2,a,b,b1,m) {

Hoping someone can offer me some assistance. I'm trying to execute a script and I keep getting this error message about "Error: element 12 is empty". I'm wondering if my syntax is incorrect within legend.list. If anyone has any suggestions to sees something obvious that I am missing, I would greatly appreciate any help. Many Thanks, Patrick > # These are the symbols and

Hi all... Recently a new Fail2Ban was available among some other updates for my Centos 7 system, and I just updated all. It seems that was a very BAD idea. Just noticed that Fail2Ban have generated a 6MB error log because of the update, and FirewallD a 1MB log of errors ! (not sure if any of those were really working after this) ok, I'll just run yum downgrade fail2ban I thought. Naa, no

I have a path: path = "/nfs/users/nfs_n/ns9/ Phenotype Analysis/Results/Run_AmplRatio_neg BinaryAll trained without akapn+tnik.csv" I wish to replace the spaces with "\ " so that it can be read by a system call to unix. Using gsub I try: > gsub(" ","\\ ",path) [1] "/nfs/users/nfs_n/ns9/Phenotype Analysis/Results/Run_AmplRatio_neg BinaryAll