Displaying 20 results from an estimated 1000 matches similar to: "Sweave truncation"
2009 Aug 19
3
Sweave output from print.summary.glm is too wide
Hi all
I am preparing a document using Sweave; a really useful tool. But I am having a problem.
Consider this toy example Sweave file:
\documentclass{article}
\begin{document}
<<echo=TRUE,results=verbatim>>=
options(width=40) # Set width to 40 characters
hide <- capture.output(example(glm)) # Create an example of the problem, but hide the output
summary(glm.D93) #
2010 Dec 14
0
Sweave problem: lines repeated
Hi all
I'm having a problem when using Sweave. Here is a minimal example.
My input file (eg, test.Snw) looks like this:
<<TESTME,echo=FALSE, results=hide,fig=FALSE,keep.source=TRUE>>=
data(cars)
m1 <- lm( dist~speed, data=cars ); coef( m1 )
@
<<echo=TRUE,results=verbatim,fig=FALSE,keep.source=TRUE>>=
<<TESTME>>
@
<<TESTME2,echo=FALSE,
2010 Aug 26
3
Using termplot() with transformations of x
Hi all
I was playing with termplot(), and came across what appears to be an inconsistency.
It would appreciate if someone could enlighten me:
> # First, generate some data:
> y <- rnorm(100)
> x <- runif(length(y),1,2)
> # Now find the log of x:
> logx <- log(x)
>
> # Now fit two models that are exactly the same, but specified differently:
> m1 <-
2010 Mar 06
0
thin grid lines, again (FAQ 7.36), a proposal
Hi,
I'm raising the issue, again, of those pesky thin lines that show up
with a pdf graphics device, otherwise known as FAQ 7.36. I have read
the FAQ and understand that I can eliminate them by adjusting the
anti-aliasing
option for viewing them on the screen, but this doesn't necessarily
eliminate them for a print device or for transferring them into a powerpoint
or similar type of
2009 Apr 24
2
Error building package: LaTeX error when creating PDF version
Hi all
I am trying to build an R package, which I have successfully done many times before, but have an error I cannot trace. I hope someone can help me.
Here's is some edited output (full output below if it is useful):
pdunn2 at PDunnUbuntu:~/DSdata$ R CMD build GLMsData
* checking for file 'GLMsData/DESCRIPTION' ... OK
* preparing 'GLMsData':
* checking DESCRIPTION
2012 Sep 11
2
.NAME in .Fortran
Hi all
I've been getting some emails from the R package maintainers that I need
to update some code in a CRAN packge that uses FORTRAN, to comply with
(not so recent) changes. I've been a little busy...
I'm having trouble adjusting my code. I hope someone can help.
The package was working fine, and a few R functions in my package had
lines like this:
tmp <- .Fortran(
2023 Jan 28
1
lines through points in lattice legend
On Sat, Jan 28, 2023 at 2:49 PM Kenneth Knoblauch
<ken.knoblauch at inserm.fr> wrote:
>
> Hi,
>
> I'm struggling to find if there is a simple way to make the lines and points overlap in a legend for a lattice plot using auto.key. Here is a toy example of what doesn't work (for me) as the lines and points are adjacent rather than overlapping:
>
> library(lattice)
2006 May 17
0
adding grid lines to an xyplot when there is only 1 panel
I've been struggling with this for a while and cannot get it to work.
Is there a simple way to add grid lines ---- I'd like to only add the
horizontal ones --- when using the groups argument in xyplot?
I can get the grid lines to plot, or the points/lines, but not both.
Here is a simple example of the sort of thing that I'm working with.
Thanks, in advance.
>all
est STE
2012 Jul 31
0
new package MPDiR version 0.1-11
We announce the release of package MPDiR version 0.1-11 which contains
data sets and functions to support the forthcoming book
"Modeling Psychophysical Data in R" by K. Knoblauch and L. T. Maloney,
Use R! Vol 32, Springer (expected publication date: September 2012).
The package includes several data sets from published psychophysical
experiments using detection and rating scale measures
2012 Mar 17
1
parApply vs parCapply
I've started to use the parallel package and it works very well speeding
things up. Thank you for making this easy to do.
Should I have expected that parCapply would return a vector
when parApply returns a matrix?
library(parallel)
x <- matrix(rnorm(8), nc = 2)
apply(x, 2, function(y) y)
[,1] [,2]
[1,] -0.9649685 0.91339851
[2,] -1.4313140 0.13457671
[3,] 1.0499248
2010 Feb 11
1
Sweave, lty = 3 line incorect in pdf output
I'm having a problem with dotted lines (lty = 3) in the pdf output
in documents generated with Sweave. In the displayed pdf, the
dotted line does not show up and in the printed output, it is
there but does not seem to respect the lwd argument, for example, it
is very faint despite using lwd = 3. The dotted line is correct
in a quartz window and if I save the Quartz window to a pdf
and
2009 Sep 09
0
new package MLCM: Maximum Likelihood Conjoint Measurement
This is to announce a new package MLCM on CRAN.
The package provides functions for estimating perceptual scales
by maximum likelihood from data collected in a conjoint measurement
experiment. Data for conjoint measurement are typically collected
using a psychophysical procedure. The stimuli vary along 2 or more
dimensions. The observer views pairs of stimuli and judges which
stimulus of each pair
2009 Sep 09
0
new package MLCM: Maximum Likelihood Conjoint Measurement
This is to announce a new package MLCM on CRAN.
The package provides functions for estimating perceptual scales
by maximum likelihood from data collected in a conjoint measurement
experiment. Data for conjoint measurement are typically collected
using a psychophysical procedure. The stimuli vary along 2 or more
dimensions. The observer views pairs of stimuli and judges which
stimulus of each pair
2009 Feb 23
0
length 1 offset in glm
Hi,
I'm trying to use an offset with glm. According to the glm man
page
offset ... This should be NULL or a numeric vector of length either
one or equal to the number of cases. ...
but with the following example, I get an error if the offset is of length 1
c1 <- structure(list(Contr = c(0.028, 0.043, 0.064, 0.097, 0.146, 0.219
+ ), Correct = c(34L, 57L, 94L, 152L, 160L, 160L),
2009 Dec 08
4
lower.tail option in pnorm
Hi,
I would have thought that these two constructions would
produce the same result but they do not.
Resp <- rbinom(10, 1, 0.5)
Stim <- rep(0:1, 5)
mm <- model.matrix(~ Stim)
Xb <- mm %*% c(0, 1)
ifelse(Resp, log(pnorm(Xb)), log(1 - pnorm(Xb)))
pnorm(as.vector(Xb), lower.tail = Resp, log.p = TRUE)
> ifelse(Resp, log(pnorm(Xb)), log(1 - pnorm(Xb)))
[1] -0.6931472 -1.8410216
2010 Jan 27
1
term.formula error when updating an nls object
Hi,
I'm getting an error that I don't understand when updating an nls
object. Here is a toy example.
dd <- structure(list(Contrast = c(0.00376, 0.03759, 0.12782, 0.25564,
0.50376, 1), Response = c(0.29915, 6.13248, 29.01709, 30.0641,
29.46581, 27.67094)), .Names = c("Contrast", "Response"), class =
"data.frame", row.names = c(NA,
-6L))
m1 <-
2009 Jun 16
1
overshoot of formula line in summary output of Sweave
Hi,
In the Sweave output for summary for several types
of model objects and also for the comparison of models
with anova, I find that that the display of the call(s)
or formula does not obey the width option, even with
keep.source=TRUE set, so that a long formula will overshoot
the margins in the document. I would like to know if
there is a good way to correct that. Looking at the
print.summary
2008 Oct 16
1
packages in Depends field and NAMESPACES
Must packages in the Depends field of the DESCRIPTION file have
NAMESPACES? I haven't seen this explicitly indicated anywhere.
I am writing a small package and find that when I add the abind
package to the list of the Depends field, I get an error in
R CMD check of the build.
* checking package name space information ... OK
* checking package dependencies ... ERROR
Packages required but not
2023 Jan 28
2
lines through points in lattice legend
Hi,
I'm struggling to find if there is a simple way to make the lines and points overlap in a legend for a lattice plot using auto.key. ?Here is a toy example of what doesn't work (for me) as the lines and points are adjacent rather than overlapping:
library(lattice)
d <- data.frame(x = 1:2, y = 1:4, f = factor(letters[1:2]))
xyplot(y ~ x, d, groups = f, type = "b",?
pch =
2008 Sep 09
1
puzzle about contrasts
Hi,
I'm trying to redefine the contrasts for a linear model.
With a 2 level factor, x, with levels A and B, a two level
factor outputs A and B - A from an lm fit, say
lm(y ~ x). I would like to set the contrasts so that
the coefficients output are -0.5 (A + B) and B - A,
but I can't get the sign correct for the first coefficient
(Intercept).
Here is a toy example,
set.seed(12161952)
y