similar to: Installing Rmpi on Centos 5.2

I am trying to install the R package "Rmpi" which needs libmpi. I've installed openmpi and lam in Centos 5.2: [root at rab45-1 /]# rpm -qv openmpi openmpi-1.2.5-5.el5 openmpi-1.2.5-5.el5 [root at rab45-1 /]# rpm -qv lam lam-7.1.2-14.el5 lam-7.1.2-14.el5 But I get the following error message when trying to install Rmpi: /usr/bin/ld: skipping incompatible /usr/lib/lam/lib/libmpi.so

Hi, everybody. I hope the new year is treating you well. In a Rocks Cluster Linux system (that's Centos 5.2 based), I have built R-2.10 and it runs well. While fiddling with MPI libraries and R packages, I've noticed a few little wrinkles. This comes as no surprise to the veteran R programmers, but let me share to the new guys the following gem: There is a difference between . and -

I try to install Rmpi as root with install.packages("Rmpi"). It fails with: ... checking for x86_64-pc-linux-gnu-gcc -std=gnu99 option to accept ISO C89... none needed I am here /usr and it is OpenMPI Trying to find mpi.h ... Found in /usr/include Trying to find libmpi.so or libmpich.a ... Found libmpi in /usr/lib checking for openpty in -lutil... yes checking for main in -lpthread...

Hi, I was trying to install the package Rmpi on a hpc cluster running SGE. The command, and the sessionInfo() is as follows: =========================================== > install.packages("Rmpi",dependencies=TRUE) also installing the dependency ‘rsprng’ trying URL ' http://www.ibiblio.org/pub/languages/R/CRAN/src/contrib/rsprng_1.0.tar.gz' Content type

I am running into the following issue that has been previously reported on the R-devel mailing list. The short version is that I'm writing a package for MPI, and I'd like to change CC and SHLIB_LD to "mpicc". Trying to change them in Makevars.in has no effect, because the values are clobbered by /etc/R/Makeconf. Will the following changes to Makeconf.in introduce any problems?

Dear all, I have used the Rmpi package many times before however this time I've installed it as I always do with openMPI tar.gz file direct from the website. I'm installing on my ubuntu 8.10. Linux 2.6.27-11-generic #1 SMP Thu Jan 29 19:28:32 UTC 2009 x86_64 GNU/Linux All i get is: > library(Rmpi) Segmentation fault :~$ Which dumps me back into the shell, and doens't give me much

Ive tryed this: R CMD INSTALL Rmpi_0.5-2.tar.gz But occurred this error: gcc -shared -L/usr/local/lib64 -o Rmpi.so conversion.o internal.o RegQuery.o Rmpi.o -lmpi -llam -lutil -lpthread -L/usr/local/lib64/R/lib -lR /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.3/../../../../x86_64-suse-linux/bin /ld: /usr/local/lib/libmpi.a(infoset.o): relocation R_X86_64_32 can not be used when making a shared

Hi guys, I've spent a few days trying to install Rmpi with no luck. I originally tried using mpich, moved on to mpich2, and then to openmpi. I've gotten the furthest with openmpi, though am still running into this problem and can't figure it out. Can someone help!? Thanks so much in advanced. I'm using an HP Envy laptop with Ubuntu 12.04. Output is below, with the error at the

I'm having trouble with R CMD INSTALL Rmpi_0.5-5.tar.gz --configure-args=~/lam lam is is installed locally. lamboot -d (or lamboot-d and also recon) works. make -k check from the lamtest suite passes all tests. Is this is problem with the -fPIC compiler as in the message? Should it be modified in the Makefile? Any help or comments are appreciated, thanks. * Installing to library

Dear R People: Here are my latest attempts for Rmpi: This is the list of locations for mpi.h: /home/faculty/hodgess/mpich2-1.0.5p4/src/include/mpi.h /home/faculty/hodgess/include/mpi.h /home/faculty/hodgess/lam-7.1.4/romio/adio/sgi/mpi3.1/mpi.h /home/faculty/hodgess/lam-7.1.4/share/include/mpi.h /usr/src/linux-2.4.21-20.EL/drivers/addon/fusion_20505/lsi/mpi.h

Hi guys, I'm trying to install Rmpi on the slave nodes of my cluster. The installation seems to work with no errors or warnings using this command: R CMD INSTALL --configure-args="--with-Rmpi-include=/usr/lib64/openmpi/1.3.2-gcc/include --with-Rmpi-libpath=/usr/lib64/openmpi/1.3.2-gcc/lib --with-Rmpi-type=OPENMPI" Rmpi_0.5-8.tar.gz But when I attempt to load Rmpi I get the

Hi, I've been trying here to install Rmpi on an SGI IA-64 machine with 64 processors, running SuSE Linux Enterprise Server 9, R 2.4.0 and lam-mpi 7.1.3. While I've read of similar problems on this list, I think I've got an entirely new set of error messages to contribute (see below). I'm not sure what the actual error is and what the @gprel relocation message is about. Any help

Hello everyone im trying to install Rmpi library on centos 6. I have already installed mpich2 1.4 [root@localhost ~]# R --version > R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows" > Copyright (C) 2012 The R Foundation for Statistical Computing > ISBN 3-900051-07-0 > Platform: x86_64-redhat-linux-gnu (64-bit) [root@localhost ~]# mpich2version > MPICH2 Version:

Hello, I plan to use R with my cluster with OpenMPI. I need the packaged 'snow' and 'Rmpi' for that, however, I get an error while downloading and installing them: When I do a: install.packages("Rmpi", dependencies=T) I get this error: checking for mpi.h... no Try to find libmpi.so or libmpich.a checking for main in -lmpi... no libmpi not found.

Dear R People: I'm trying to install Rmpi (latest version) on Ubuntu. However, I'm getting the following error: erin at erin-Y480:~$ R R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows" Copyright (C) 2012 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are

Subject pretty much says it all. I am running 64-bit Ubuntu 8.04, i.e. Hardy Heron, have openmpi installed, and get the following error message with attempted install of Rmpi. sessionInfo() follows. Mark checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes

Hello R users and developers, I would like to install Rmpi so that I may take advantage of all of the CPUs in my computer, but I cannot get it to install and I am not very good with linux so it is adding to the headache. I have looked through the help archive, but I have not been successful at getting Rmpi to work. I am not sure if I am even installing openMPI correctly in linux. I would really

1.I have a library fpmpi . I made the shared library fpmpi.so from this library.I am using ubuntu . 2.Now, I want to use in my R package .My R package has src folder the there is makevars.in file ### Setup R source code and objects. PKG_CPPFLAGS = @PKG_CPPFLAGS@ PKG_LIBS = -L/home/g/Desktop/Project -fpmpip ### For user configuration. USER_CONF = Makeconf ### Start making here. all:

Hi R Gurus. I'm trying to install the Rmpi package. Here are the errors: checking for stdint.h... yes checking for unistd.h... yes checking mpi.h usability... no checking mpi.h presence... no checking for mpi.h... no Try to find libmpi or libmpich ... checking for main in -lmpi... no libmpi not found. exiting... ERROR: configuration failed for package 'Rmpi' ** Removing

Hi all, I am trying to install the Rmpi package in R and, while the installation itself works, it breaks down when trying to load the library. I think it has something to do with shared vs static loading of helper libraries, or the order in which shared libraries are loaded, but I am not sure. R version: 2.14.0 Linux version: Gentoo, i686-pc-linux-gnu (32-bit) GCC version: 4.5.3 (Gentoo 4.5.3-r1