similar to: How to combine xtable and minipage with Sweave ?

Dear all, Myself Vijaykumar Muley working as senior research fellow. By training I am a computational biologist with not a strong knowledge of statistics. I have done some analysis which is explained as follows, I have 10340 (X) profiles of binary vectors with same length(N=845), I will call then "gene profiles" for example... v1 v2 v3 v4.....vN a 1 0 1 0 1 b 0

Hi list, I was using Sweave and was wondering if anyone has had any luck changing the font colors of the code chunks. For instance, in my .Rnw preample I tried including: === \usepackage[usenames]{colors} \definecolor{darkred}{rgb}{0.545,0,0} \definecolor{midnightblue}{rgb}{0.098,0.098,0.439} \DefineVerbatimEnvironment{Sinput}{Verbatim}{fontshape=sl,formatcom={\color{midnightblue}}}

Dear Colleagues: In an attempt to have things like # See page \pageref{this} inside comments in R code chunks I have modified Sweave.sty as below. I have followed fancyvrb's manual with regard to the use of the commandchars argument. But when compiling with LaTeX (using attached test file) I get a LaTeX error (/usr/share/texmf-texlive/tex/latex/ae/t1aett.fd) ! Missing \endcsname

In an Sweave slide, I want to use sem::read.moments() and sem::specify.model(), which work by using scan() to read the following lines, up to the first blank line. However, Sweave throws an error: > Sweave("sem-thurstone.Rnw") Writing to file sem-thurstone.tex Processing code chunks ... 1 : term hide (label=arrests-setup) 2 : echo term hide (label=thurstone-data) Error:

if I want to put fig1plot to the left, figYPplot to the right figYAaplot on the bottom. How to modify the following cod to do these? \begin{figure}[H] \centering \begin{minipage}[t]{0.5\textwidth} \centering <<label=fig1plot,fig=TRUE,echo=FALSE>>= <<fig1plot>> @ %\caption{Caption 1} \end{minipage} \begin{minipage}[t]{0.5\textwidth} \centering

R2WinBUGS users, I'm getting the error message "monitor could not be set" when I try to monitor (and output to R) a response variable that includes missing data (NAs)...ie.e imputing for y. Setting monitors for other parameters works OK and running the R-generated WinBUGS script file in WinBUGS, also works OK. Below is my R code and the log.txt file output by R2WinBUGS. As I want to

Hello folks, I am having a problem installing pbatR package. (My R version is 2.8.1.) As I execute a command > install.packages(lib='/usr/local/apps/R-2.8.1/lib64/R/library', "pbatR") it detects lack of rootSolve package and attempts to install it. But cannot seem to compile it, and the rest is aborted. Any hint as to what I can do? Thank you in advance for your

hi there, trying to follow the steps of Yan & Rossini 2003, I have two problems : first when I 'make CrossCompileBuild', I get : ****************************************************************************** make[1]: Entering directory `/home/ros/RWORK/CROSSSOMP/WinR/R-1.8.0/src/gnuwin32' make -f Makefile.docfiles make[2]: Entering directory

Dear R gurus and users, for some functions in some of the many packages available for R, with the current definition of \Header given in Rd.sty, the heading bumps into the surrounding words in documentation printed via LaTeX. To alleviate this minor typographical mishap, I'd like to suggest the change to R/doc/manual/Rd.sty included below as a context diff. With this minor diff applied, the

Dear List, I have just compiled my first R library for submission to CRAN; however, I have a tiny problem with 'R CMD check' that is holding me back. I have read extensively the PDF document on Writing R Extensions and the 'Making R Packages Under Windows' tutorial by P. Rossi. All functions are given in R code (no C/C++/Fortran) with two very simple demonstration datasets. My

Hi, I am trying to work with the output of the MINE analysis routine found at http://www.exploredata.net Specifically, I am trying to read the results into a matrix (ideally an n x n x 6 matrix, but I'll settle right now for getting one column into a matrix.) The problem I have is not knowing how to take what amounts to being one half of a symmetric matrix - excluding the diagonal -

Hello, I am a newbie. I can run the following code stored in "test.txt" without error using my XP machine: x <- scan("C:\\Rwork\\A.txt") x10 = filter(x, rep(1/10,10), sides=1) x x10 for(i in 10:length(x)){ if (x[i] > x10[i]) diff[i]="b" else diff[i]="s" } However, if I run it in another PC that uses Windows 7, the following error occurs:

This is a multipart message in MIME format. --=_alternative 00812CFCCA256D66_= Content-Type: text/plain; charset="us-ascii" Two points in respect to PR#2867. First, the trivial one: (1) In Lapack.c, on lines 806 and 812, there are calls of F77_CALL(dgeqp3). But the error messages on lines on lines 809 and 815 refer to "dqeqp3", i.e., they currently have a "q"

I'm trying to put together a poster using the LaTeX a0poster package and including some things from pstricks to get gradient shading, etc. The problem is that the default environments used by Sweave don't work where I need them. A simple code chunk like <<eval=FALSE>>= x <- 1 @ buried in a minipage within a psshadowbox gives the error Runaway argument? > x <- 1

Dear WizaRds, I wrote a small function in R and would like to create a package. The necessary documentation is done, Rtools etc. are installed and I am still unable to complete the process under Windows. I did extensive research in the archives and read the Murdoch-Sutherland website on the Rtools and MikTeX hints. I realize that I understand only half or less of what is said there

Dear all, i was working under R 1.6.2 but i wanted to install bioconductor under WinXP, and because R 1.7.1 contains the TclTk package and automatic installation of bioconductor packages, so i install it. Everything is fine except this message which appear after the installation of packages. "> local({a<- CRAN.packages(CRAN=getOption("BIOC")) +

Hi, I am trying to run the "schools" example in the rbugs library (running winbugs in linux via wine-20041201) but keep getting the following error. Note I have tested wine and winbugs to confirm that both are operational. Error in runBugs(bugs, script.file, n.chains, workingDir, useWine, wine, : BUGS stopped before getting to coda. The command I'm using is:

Hi, I recently discovered the R program and I thought it could be useful to me. I have to analyse data saved as .Px file (x between 0 and 8 - .P0 files have 18 lines at the beginning that I have to skip). New files are generated everyday. This is my strategy : In order to analyse the data, I first want to copy the new data in a database in MySQL (which already contains the previous data). So

Hi, I am editing a document for submission to the R-news newsletter, and in my article my Sweave code inserts a dynamically generated PDF report that my R program generates. However, when I insert the PDF using the following Sweave code: \newpage \includegraphics[scale=1.0]{\Sexpr{print(location)}} \newpage (in tex this looks like): \newpage \includegraphics[scale=1.0]{/home/arjun/sample.pdf}

** High Priority ** I have been trying to read an SPSS file into R using read.spss ("C:/Documents and Settings/Roderick Harrison/My Documents/RWORK/ihisdat.sav", use.value.labels = TRUE, to.data.frame = FALSE, max.value.labels = 500, trim.factor.names = FALSE, trim_values = TRUE, reencode = NA, use.missings = to.data.frame) Each time (at least 5 or 6 by now) I get the following