search for: zipdata

Dear developeRs, I've searched the documentation, FAQ, and mailing lists, but haven't found the answer(*) to the following: When should one specify LazyLoad, LazyData, and ZipData? And what is the default if they are left unspecified? (*)Except that 1) If the package you are writing uses the methods package, specify LazyLoad: yes, and 2) The optional ZipData field controls whether the automatic Windows build will zip up the data directory or no: set this to no if your pac...

Hello, I am building a R-package for Genetics analysis. The accepted data is in pedigree (.ped) file format. To load the data (say CAMP.ped) from "data" directory, I have a function "CAMP.R", which does the job. The package builds successfully in Linux (.tar.gz) and the data loads successfully by "data(CAMP)". However, when I build the package in WINDOWS, the data

...s, and are often large. DEPRECATED & DEFUNCT: ? The ?experimental? alternative specification of a name space via .Export() etc is now deprecated. ? zip.file.extract() is now deprecated. ? Zip-ing data sets in packages (and hence R CMD INSTALL --use-zip-data and the ZipData: yes field in a DESCRIPTION file) is deprecated: using efficiently compressed .rda images and lazy-loading of data has superseded it. BUG FIXES: ? identical() could in rare cases generate a warning about non-pairlist attributes on CHARSXPs. As these are used for int...

...s, and are often large. DEPRECATED & DEFUNCT: ? The ?experimental? alternative specification of a name space via .Export() etc is now deprecated. ? zip.file.extract() is now deprecated. ? Zip-ing data sets in packages (and hence R CMD INSTALL --use-zip-data and the ZipData: yes field in a DESCRIPTION file) is deprecated: using efficiently compressed .rda images and lazy-loading of data has superseded it. BUG FIXES: ? identical() could in rare cases generate a warning about non-pairlist attributes on CHARSXPs. As these are used for int...

...n -l is used to specify an alternate package library. here's an example of what we're seeing: C:\rlibdir\hpages>set R_LIBS=c:\rlibdir\hpages C:\rlibdir\hpages>d:\biocbld\R-devel\bin\R CMD INSTALL -l=%R_LIBS% --build Biobase_1.6.7.tar.gz Using auto-selected zip options 'Biobase-ZIPDATA=zip Biobase-HELP=ziponly' ---------- Making package Biobase ------------ adding build stamp to DESCRIPTION installing NAMESPACE file and metadata making DLL ... ... DLL made installing DLL installing R files save image Loading required package: tools Creating a new generic functi...

Hello, I'm running R with windows. Could anybody help me how to install the package biOps (http://cran.mirroring.de/src/contrib/Descriptions/biOps.html) ? I cannot find it at any mirror provided by the GUI; I just found it as "tar.gz" which cannot be installed with the installation method... Maybe, I simply do something wrong? Thanks for any hint! Antje

Hi I'm having difficulty making a package pass R CMD check. I need to read in a dataset from another package, modify it, and have the modified object available in the first package. help(require) says: The source code for a package that requires one or more other packages should have a call to 'require', preferably near the beginning of the source, and of course

Hello, When I run R CMD build --binary pkgname I get * checking for file 'pkgname/DESCRIPTION' ... OK * preparing 'pkgname': * checking DESCRIPTION meta-information ... OK * cleaning src * removing junk files * checking for LF line-endings in source and make files * checking for empty or unneeded directories * building binary distribution * installing *source* package

...lorer. The internal unzip and the installer now use unzip5.41, not unzip5.40, and the DLL interface is incompatible. There are changes in the tools needed to build R (see the file INSTALL) and those recommended for building packages from source (see the file readme.packages). New makefile target zipdata-% to zip up data directories in packages. If there is a file `Makefile.win' in a package src directory this will be used rather than MakePkgs (and the tcltk package provides an example). There is an example package `windlgs' in the package sources distribution that shows how to use grapha...

...lorer. The internal unzip and the installer now use unzip5.41, not unzip5.40, and the DLL interface is incompatible. There are changes in the tools needed to build R (see the file INSTALL) and those recommended for building packages from source (see the file readme.packages). New makefile target zipdata-% to zip up data directories in packages. If there is a file `Makefile.win' in a package src directory this will be used rather than MakePkgs (and the tcltk package provides an example). There is an example package `windlgs' in the package sources distribution that shows how to use grapha...

...lorer. The internal unzip and the installer now use unzip5.41, not unzip5.40, and the DLL interface is incompatible. There are changes in the tools needed to build R (see the file INSTALL) and those recommended for building packages from source (see the file README.packages). New makefile target zipdata-% to zip up data directories in packages. rw1001 ====== The installer, rwinst.exe, now checks for ZIP files as well as zip files, as some browsers manage to map filenames to uppercase. There are batch files Rd2txt.bat Rdconv.bat Rdindex.bat Sd2Rd.bat which are the equivalent of the Unix `R CMD...

...value is used for the EXPR argument in switch(), only a single unnamed alternative value is now allowed. ? The wrapper utils::link.html.help() is no longer available. ? Zip-ing data sets in packages (and hence R CMD INSTALL options --use-zip-data and --auto-zip, as well as the ZipData: yes field in a DESCRIPTION file) is defunct. Installed packages with zip-ed data sets can still be used, but a warning that they should be re-installed will be given. ? The ?experimental? alternative specification of a name space via .Export() etc is now defunct....

...value is used for the EXPR argument in switch(), only a single unnamed alternative value is now allowed. ? The wrapper utils::link.html.help() is no longer available. ? Zip-ing data sets in packages (and hence R CMD INSTALL options --use-zip-data and --auto-zip, as well as the ZipData: yes field in a DESCRIPTION file) is defunct. Installed packages with zip-ed data sets can still be used, but a warning that they should be re-installed will be given. ? The ?experimental? alternative specification of a name space via .Export() etc is now defunct....