search for: yy1

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2008 Feb 12
2
shaded area graph and extra plot
...1994:2007 and second 1996:2007) the corresponding x's do not match. How can this be sorted out? Thanks in advance ############################################# plot.new() plot.window(xlim=c(1993,2008), xaxs="i", ylim=c(0,400), yaxs="i") x=1994:2007 xx = c(1994, x, 2007) yy1 = c(0, indexSp[,"Xhat5Sp"]+indexSp[,"seA"], 0 ) yy2 = c(0, indexSp[,"Xhat5Sp"]-indexSp[,"seA"], 0 ) polygon(xx, yy1, col="grey", lty=0) polygon(xx, yy2, col="white", lty=0) lines(x, indexSp[,"Xhat5Sp"], type="l") axis...
1999 Feb 16
1
Missing tick marks bug on alpha solved
...e: > plot(0:1,axes=FALSE) > axis(1,1:2) The problem is in X11_Line(...) from .../src/unix/devX11.c, which is so short I've included the whole function below: static void X11_Line(double x1, double y1, double x2, double y2, int coords, DevDesc *dd) { double xx1, yy1, xx2, yy2; <----------- should be int! x11Desc *xd = (x11Desc *) dd->deviceSpecific; /* In-place conversion ok */ GConvert(&x1, &y1, coords, DEVICE, dd); GConvert(&x2, &y2, coords, DEVICE, dd); xx1 = (int) x1; yy1 = (int) y1; xx2 = (i...
2009 Jun 20
1
string splitting and testing for enrichment
Hi List I have data in the following form: Gene    TFBS NUDC     PPARA(1) HNF4(20) HNF4(96) AHRARNT(104) CACBINDINGPROTEIN(149) T3R(167) HLF(191) RPA2     STAT4(57) HEB(251) TAF12     PAX3(53) YY1(92) BRCA(99) GLI(101) EIF3I     NERF(10) P300(10) TRAPPC3     HIC1(3) PAX5(17) PAX5(110) NRF1(119) HIC1(122) TRAPPC3     EGR(26) ZNF219(27) SP3(32) EGR(32) NFKAPPAB65(89) NFKAPPAB(89) RFX(121) ZTA(168) NDUFS5     WHN(14) ATF(57) EGR3(59) PAX5(99) SF1(108) NRSE(146) TIE1     NRSE(129) I would...
2009 Jan 22
1
Problem with cex=0.1 when making jpegs
I am using the following script to make .jpg files. jpeg('plotx.jpg') ddat <-read.table("file",header=T) attach(ddat) tdat<-read.table("file1") plot(xx1,yy1,type='p',pch=1,col="blue",cex=0.2,xlim=c(0,3.5),ylim=c(-75,75)) points(tdat,col="green",pch=1,cex=0.2) dev.off() The problem is that I want the points to be very small; however, if I make cex any smaller than 0.2 the plot in the .jpg file is blank. If I run the command...
2010 Dec 09
4
Sequence generation in a table
Dear R helpers I have following input f = c(257, 520, 110). I need to generate a decreasing sequence (decreasing by 100) which will give me an input (in a tabular form) like 257, 157, 57 520, 420, 320, 220, 120, 20 110, 10 I tried the following R code f = c(257, 520, 110) yy = matrix(data = NA, nrow = 3, ncol = 6) for (i in 1:3)      {      value = NULL      for (j in 1 : 6)           {