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...riting R function and need to find a good guide source about writing R functions. If you know a good book or website for guidance of R function, please let me know. Thanks, Ding From: Bert Gunter [mailto:bgunter.4567 at gmail.com] Sent: Monday, January 15, 2018 10:11 AM To: Ding, Yuan Chun <ycding at coh.org> Cc: Richard M. Heiberger <rmh at temple.edu>; r-help at r-project.org Subject: Re: [R] consolidate three function into one That is certainly OK, but you can also just use print(ggsurvplot(...)) as your final statement. out <- RFS( ...) would then return the ggsurvplot objec...

...ich you might find useful. Cheers, Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Mon, Jan 15, 2018 at 9:57 AM, Ding, Yuan Chun <ycding at coh.org> wrote: > Hi Richard, > > Thank you so much!! I understand the problem now, I assign a name to the > "ggsurvplot" object and then add print(fig) at bottom of function > definition, now figure gets printed on screen. > > Ding > > # function to ge...

...ee Cluster", legend.labs = legend.labs, lty=1, lwd=3) print(fig) } -----Original Message----- From: Richard M. Heiberger [mailto:rmh at temple.edu] Sent: Sunday, January 14, 2018 1:34 PM To: Ding, Yuan Chun <ycding at coh.org> Cc: Bert Gunter <bgunter.4567 at gmail.com>; r-help at r-project.org Subject: Re: [R] consolidate three function into one FAQ 7.22 You must print a ggplot object, for example with print(m52.2cluster) For the FAQ, run the line system.file("../../doc/FAQ") in R on...

...ong and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Mon, Mar 5, 2018 at 2:03 PM, David Winsemius <dwinsemius at comcast.net<mailto:dwinsemius at comcast.net>> wrote: > On Mar 5, 2018, at 8:52 AM, Ding, Yuan Chun <ycding at coh.org<mailto:ycding at coh.org>> wrote: > > Hi Bert, > > I am very sorry to bother you again. > > For the following question, as you suggested, I posted it in both Biostars website and stackexchange website, so far no reply. > > I really hope that you can do me...

...is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Mon, Mar 5, 2018 at 2:03 PM, David Winsemius <dwinsemius at comcast.net> wrote: > > > On Mar 5, 2018, at 8:52 AM, Ding, Yuan Chun <ycding at coh.org> wrote: > > > > Hi Bert, > > > > I am very sorry to bother you again. > > > > For the following question, as you suggested, I posted it in both > Biostars website and stackexchange website, so far no reply. > > > > I really hope that...

...ge.com> statistical site. Cheers, Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Fri, Mar 2, 2018 at 10:34 AM, Ding, Yuan Chun <ycding at coh.org<mailto:ycding at coh.org>> wrote: Dear R users, I need to analyze data generated from a partial two-by-two factorial design: two levels for drug A (yes, no), two levels for drug B (yes, no); however, data points are available only for three groups, no drugA/no drugB, yes drugA...

> On Mar 5, 2018, at 8:52 AM, Ding, Yuan Chun <ycding at coh.org> wrote: > > Hi Bert, > > I am very sorry to bother you again. > > For the following question, as you suggested, I posted it in both Biostars website and stackexchange website, so far no reply. > > I really hope that you can do me a great favor to share your...

...egend = "bottom", legend.title = "Tree Cluster", legend.labs = legend.labs, lty=1, lwd=3) } From: Bert Gunter [mailto:bgunter.4567 at gmail.com] Sent: Sunday, January 14, 2018 9:50 AM To: Ding, Yuan Chun <ycding at coh.org> Subject: Re: [R] consolidate three function into one I have not looked at your code *at all*, so I am not sure what exactly you mean by "consolidate." Is this what you are after? f1 <- function(...) { code 1} f2 <- function(...) { code 2} f3 <- function(...) { co...

...7.22 You must print a ggplot object, for example with print(m52.2cluster) For the FAQ, run the line system.file("../../doc/FAQ") in R on your computer. Open up the resulting filepath in your favorite editor and scroll down to 7.22 On Sun, Jan 14, 2018 at 4:21 PM, Ding, Yuan Chun <ycding at coh.org> wrote: > Hi Bert, > > I am sorry to bother you on weekend. > > I am still struggling on defining a correct function. > > I first defined the function RFS (see below), then run it by provide the two argument. > > m52.2cluster <-RFS(inputfile =allinfo_m52,...

...hange.com statistical site. Cheers, Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Fri, Mar 2, 2018 at 10:34 AM, Ding, Yuan Chun <ycding at coh.org> wrote: > Dear R users, > > I need to analyze data generated from a partial two-by-two factorial > design: two levels for drug A (yes, no), two levels for drug B (yes, no); > however, data points are available only for three groups, no drugA/no > drugB, yes drugA/no...

Dear R users, I need to analyze data generated from a partial two-by-two factorial design: two levels for drug A (yes, no), two levels for drug B (yes, no); however, data points are available only for three groups, no drugA/no drugB, yes drugA/no drugB, yes drugA/yes drug B, omitting the fourth group of no drugA/yes drugB. I think we can not investigate interaction between drug A and drug B,

...ing things into it." > > -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) > > > > On Mon, Mar 5, 2018 at 2:03 PM, David Winsemius <dwinsemius at comcast.net> > wrote: > > > > > On Mar 5, 2018, at 8:52 AM, Ding, Yuan Chun <ycding at coh.org> wrote: > > > > > > Hi Bert, > > > > > > I am very sorry to bother you again. > > > > > > For the following question, as you suggested, I posted it in both > Biostars website and stackexchange website, so far no reply. > >...

...keep coming along and sticking things into it." > -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) > > On Mon, Mar 5, 2018 at 2:03 PM, David Winsemius <dwinsemius at comcast.net> wrote: > > > On Mar 5, 2018, at 8:52 AM, Ding, Yuan Chun <ycding at coh.org> wrote: > > > > Hi Bert, > > > > I am very sorry to bother you again. > > > > For the following question, as you suggested, I posted it in both Biostars website and stackexchange website, so far no reply. > > > > I really hope that you c...

...sticking things into it." > > -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) > > > > On Mon, Mar 5, 2018 at 2:03 PM, David Winsemius <dwinsemius at comcast.net> wrote: > > > > > On Mar 5, 2018, at 8:52 AM, Ding, Yuan Chun <ycding at coh.org> wrote: > > > > > > Hi Bert, > > > > > > I am very sorry to bother you again. > > > > > > For the following question, as you suggested, I posted it in both Biostars website and stackexchange website, so far no reply. > > >...

...B C1 C2 1 1 29_log 1 1 2 2 29_log 1 1 3 3 29_log 1 1 4 4 27_cat 2 2 5 5 27_cat 2 2 6 6 1_log 3 3 7 7 1_log 3 3 8 8 1_log 3 3 9 9 1_log 3 3 10 10 1_log 3 3 11 11 3_cat 4 4 12 12 3_cat 4 4 Sarah On Fri, May 11, 2018 at 1:52 PM, Ding, Yuan Chun <ycding at coh.org> wrote: > Hi All, > > I have a data frame dat1: > dat1 <-data.frame(N=seq(1, 12,1), B=c("29_log","29_log", "29_log", "27_cat", "27_cat", > "1...

...ts, adding flexibility to accommodate the number of clusters or the number of Kaplan Meier curves generated in one figure. So, I just need to define one function. Thanks, Ding From: Bert Gunter [mailto:bgunter.4567 at gmail.com] Sent: Sunday, January 14, 2018 9:50 AM To: Ding, Yuan Chun <ycding at coh.org> Subject: Re: [R] consolidate three function into one I have not looked at your code *at all*, so I am not sure what exactly you mean by "consolidate." Is this what you are after? f1 <- function(...) { code 1} f2 <- function(...) { code 2} f3 <- function(...) { co...

...)))[ match( dat1$B, unique(dat1$B) )] -Don -- Don MacQueen Lawrence Livermore National Laboratory 7000 East Ave., L-627 Livermore, CA 94550 925-423-1062 Lab cell 925-724-7509 ?On 5/11/18, 12:04 PM, "R-help on behalf of Ding, Yuan Chun" <r-help-bounces at r-project.org on behalf of ycding at coh.org> wrote: Hi Sarah, Thank you so much!! I got your good ideas. Ding -----Original Message----- From: Sarah Goslee [mailto:sarah.goslee at gmail.com] Sent: Friday, May 11, 2018 11:40 AM To: Ding, Yuan Chun Cc: r-help mailing list Subje...

> On Apr 19, 2018, at 1:22 PM, David Winsemius <dwinsemius at comcast.net> wrote: > > >> On Apr 19, 2018, at 11:20 AM, Ding, Yuan Chun <ycding at coh.org> wrote: >> >> Hi All, >> >> I want to create a categorical variable, cat.pfoa, in the file of pfas.pheno (a data frame) based on log2pfoa values. I can do it using the following code. >> >> pfas.pheno <-within(pfas.pheno, {cat.pfoa<-NA >...

...B C1 C2 1 1 29_log 1 1 2 2 29_log 1 1 3 3 29_log 1 1 4 4 27_cat 2 2 5 5 27_cat 2 2 6 6 1_log 3 3 7 7 1_log 3 3 8 8 1_log 3 3 9 9 1_log 3 3 10 10 1_log 3 3 11 11 3_cat 4 4 12 12 3_cat 4 4 Sarah On Fri, May 11, 2018 at 1:52 PM, Ding, Yuan Chun <ycding at coh.org> wrote: > Hi All, > > I have a data frame dat1: > dat1 <-data.frame(N=seq(1, 12,1), B=c("29_log","29_log", "29_log", "27_cat", "27_cat", > "1...

Hi All, I have a data frame dat1: dat1 <-data.frame(N=seq(1, 12,1), B=c("29_log","29_log", "29_log", "27_cat", "27_cat", "1_log", "1_log", "1_log", "1_log", "1_log",