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benja
2010 Aug 08
1
p.adjust( , fdr)
Hello,
I am not sure about the p.adjust( , fdr). How do these adjusted p-values
get?
I have read papers of BH method. For independent case, we compare the
ordered p-values with the alfa*i/m, where m is the number of tests. But I
have checked that result based on the adjusted p-values is different with
that by using the independent case method.
Then how do the result of p.adjust( , fdr) come?
And
2011 Sep 30
1
Hi
Hi,
There is a question that I am confused.
I have a set of data like this:
hsa-miR-205--GATA3 0.797882767 1.08E-13
hsa-miR-205--ITGB4 0.750217593 1.85E-11
hsa-miR-187--PGF 0.797604155 3.24E-11
hsa-miR-205--SERPINB5 0.744124886 3.28E-11
hsa-miR-205--PBX1 0.734487224 7.89E-11
hsa-miR-205--MCC 0.72499934 1.80E-10
hsa-miR-205--WNT5B 0.717705259 3.33E-10
hsa-miR-200c--PKN2 0.721746815