Displaying 2 results from an estimated 2 matches for "xxx_direct".
2018 May 03
0
download.file does not process gz files correctly (truncates them?)
...enexpr/Compare")
id <- "GSM907854"
flink <- paste0("
https://www.ncbi.nlm.nih.gov/geo/download/?acc=GSM907854&format=file&file=GSM907854%2ECEL%2Egz
")
fname <- paste0(id,"_inR.CEL.gz")
download.file(flink,
destfile = fname)
The file xxx_direct.CEL.gz is downloaded from
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM907854 (download link
at the bottom of the page).
Output of dir in CMD:
05/03/2018 11:02 AM 4,529,547 GSM907854_direct.CEL.gz
05/03/2018 11:17 AM 4,537,668 GSM907854_inR.CEL.gz
or from R :
> dif...
2018 May 02
7
download.file does not process gz files correctly (truncates them?)
Dear all,
I've noticed by trying to download gz files from here :
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM907811
At the bottom one can download GSM907811.CEL.gz . If I download this
manually and try
oligo::read.celfiles("GSM907811.CEL.gz")
everything works fine. (oligo is a bioConductor package)
However, if I download using
download.file("