search for: winbugs14

Dear R user: I am using R2WinBUGs to call WinBUGS from R. But I have some problems in using either the option bugs.seed and summary.only in the function bugs. Here are the programs and error messages. It appears that if I don't use either option, the program runs fine. I am using R2.5.1 and WinBUGs14. The program is not running: > schools.sim <- bugs(data, inits, parameters, model.file, + n.chains=3, n.iter=5000, bugs.seed=100, + bugs.directory="c:/Program Files/WinBUGS14/", + working.directory=NULL, clearWD=TRUE) Error in bugs(data, inits, param...

...the command "/PAR script.txt", it does not work: $ open WinBUGS.exe '/PAR script.txt' The file /PAR script.txt does not exist. It parses '/PAR script.txt' as a file name rather than an argument. I tried the following variation but it results in the same error: $ open -a WinBUGS14 '/PAR script.txt' The file /PAR script.txt does not exist. When I try passing a simpler argument, just a file name, I see that it's interpreted as a separate file to be opened: $ open -a WinBUGS14 'script.txt' This usually results in both applications opening separately -- it...

...ear all, I'm having a slight issue with R2WinBugs.... it cannot detect where WinBUGS is located. Q: How can I change the default path? Any advice is greatly appreciated. Thanks. Regards Erica I'm using R2WinBUGs (R version 2.21.1) on windows platform (Windows 7). I have downloaded WinBUGS14.exe and patch 1.4.3. As i'm working with Windows 7 (similiar issues to Vista occur), thus I have followed the instructions given on BUGS site: >Note: There appears to be a problem with installing WinBUGS and/or various patches in Windows Vista. Vista doesn't seem to like anyone overwri...

...inits = inits, parameters.to.save = params, model.file = "model.txt", n.thin = nt, n.chains = nc, n.burnin = nb, n.iter = ni, debug = TRUE, DIC = TRUE, working.directory = getwd()) ls() WinBUGS file is in working directory=D:/Line/documents but R looks for winBugs at C:/Program Files/WinBUGS14/. I already had changed the working directory for D:/Line/documents using setwd () function and it still appears this error message: In file(con, "rb") : cannot open file 'c:/Program Files/WinBUGS14//System/Rsrc/Registry.odc': No such file or directory Erro em bugs.run(n.bur...

...t;beta2", "beta3") #call winbugs using bugs() function model <- bugs(data, inits, parameters, model.file="C:/Jinmodel/test_codes/model_poisson.txt", n.chains=1, n.iter=30, n.burnin=0,n.thin=1, codaPkg=TRUE, DIC=TRUE, debug=TRUE, bugs.directory="C:/Users/Yiyi/Desktop/winbugs14/WinBUGS14") ########################################### I can get pretty good traceplots & parameter estimate outputs in WinBUGS. However, when I switched back to the R Console (by pressing ESC key), a warning message occurred: Warning message: running command '"C:/Users/Yiyi...

...d get the results, but I kept getting the error messages: Error in file(con, "wb") : cannot open the connection In addition: Warning messages: 1: In file.create(to[okay]) : cannot create file 'c:/Program Files/WinBUGS14//System/Rsrc/Registry_Rsave.odc', reason 'Permission denied' 2: In file(con, "wb") : cannot open file 'c:/Program Files/WinBUGS14//System/Rsrc/Registry.odc': Permission denied I ran two data sets, and got the same error messages. Why? How to get rid of the error me...

Greetings, How do I make a call to a windows program from R? For example in windows, I would run this in a shortcut: "C:\Program Files\WinBUGS14\WinBUGS14.exe" /PAR "myownscript.odc" Thanks, Ben Alexander-Eitzman [[alternative HTML version deleted]]

...ing WinBugs project recommendations for Vista Microcoft, I installed my Winbugs software at C:\ (not at C:\Program Files). However, when I run the attached code in R, R still looks for Winbugs at C:\Program Files and ends up in numerous error messages. I wonder if it is possible to direct R to C:\WinBUGS14 instead of default link to C:\Program Files\WinBUGS14 Thanks, Eugene -------------- next part -------------- An embedded and charset-unspecified text was scrubbed... Name: QuestionCode.txt URL: <https://stat.ethz.ch/pipermail/r-help/attachments/20080815/d0595610/attachment.txt>

..."a", "b", "b.hat", "sigma.y", "sigma.b") ineq1 <- bugs (ineq.bugs, ineq.inits, ineq.parameters, "C:/Documents and Settings/Chris/Desktop/4330/attempt2.bug", n.chains=3, n.iter=10, debug=TRUE) After I run the R code, R will crash and WinBUGS14 will post this in the log: display(log) check(C:/Documents and Settings/Chris/Desktop/4330/attempt2.txt) expected left pointing arrow <- or twiddles ~ data(C:/Documents and Settings/Chris/data.txt) command #Bugs:data cannot be executed (is greyed out) compile(3) inits(1,C:/Documents and Setting...

Dear all, I had trouble in setting up WinBUGS on my Mac, and I'm seeking for some help here. I followed the instruction by Tom Palmer here: http://www.ruudwetzels.com/MacBUGS/winbugsonmacosx.pdf I installed Darwine 1.1.21, and downloaded WinBUGS14. However, when I double-clicked the WinBUGS14.exe file, a black-box dialog window poped up, and I got error message in the Wine log as follows: fixme:keyboard:RegisterHotKey (0x10032,13,0x00000002,3): stub err:ole:CoGetClassObject class {0003000a-0000-0000-c000-000000000046} not registered err:...

...d get the results, but I kept getting the error messages: Error in file(con, "wb") : cannot open the connection In addition: Warning messages: 1: In file.create(to[okay]) : cannot create file 'c:/Program Files/WinBUGS14//System/Rsrc/Registry_Rsave.odc', reason 'Permission denied' 2: In file(con, "wb") : cannot open file 'c:/Program Files/WinBUGS14//System/Rsrc/Registry.odc': Permission denied I ran two data sets, and got the same error messages. Why? How to get rid of the error me...

Hi! I am new to BUGS and running BUGS from R. I am trying to run a regression model from R, however I have this error message: Error in file(con, "wb") : cannot open the connection In addition: Warning messages: 1: In file.create(to[okay]) : cannot create file 'c:/Program Files/WinBUGS14//System/Rsrc/Registry_Rsave.odc', reason 'Permission denied' 2: In file(con, "wb") : cannot open file 'c:/Program Files/WinBUGS14//System/Rsrc/Registry.odc': Permission denied Can anyone help me out ? I am running R2WinBUGS from a windows 7 machine. -- View this...

...the 4th argument 'model'? Just I like I am also using the 'inits' object! If I use 'model' in the same way as I use 'inits' I am getting the error: > sim <- bugs(data, inits, parameters, model, n.chains=1, n.iter=5000, bugs.directory="c:/Program Files/WinBUGS14", working.directory=NULL, clearWD=TRUE, DIC=0) Error in file.exists(c(...)) : invalid 'file' argument Thanks Toby data <- list(.....) model <- function() { [omitted] } write.model(model, "cwk.txt") inits <- function() {.....} parameters <- c(&quo...

...BUGS from R. I have a model for WinBUGS and an R code which calls WinBUGS. On running the code I am being shown the error message : Error in file(con, "wb") : cannot open the connection In addition: Warning messages: 1: In file.create(to[okay]) : cannot create file 'c:/Program Files/WinBUGS14//System/Rsrc/Registry_Rsave.odc', reason 'Permission denied' 2: In file(con, "wb") : cannot open file 'c:/Program Files/WinBUGS14//System/Rsrc/Registry.odc': Permission denied In addition in WinBUGS a window crops up which is named black box. and says trap #060 and t...

Dear all, I tried to run WinBUGS model in R by using package R2WinBUGS, but I failed because of the massage : cannot calculate DIC for model in log file of WinBUGS14. In fact, the model works in WinBUGS and I can get summaries of the model, such as density, stats..., except DIC , because DIC may not be appropriate in this kind of model due to some reasons(according to the manual of WinBUGS14), and WinBUGS cannot calculate it, but this is allowed in WinBUGS. If...

...a0=0.9, tau=1), list(alpha0=0.8,tau=1) ), model.file="B-LN_model_trial.txt", parameters.to.save = c("sigma", "tau","alpha0","p"), n.chains=3, n.iter=12000, n.burnin=5000, bugs.directory="E:/AChaudhuri/winbugs14/WinBUGS14")} print(bugs.output) The output comes out as Inference for Bugs model at "B-LN_model_trial.txt", fit using WinBUGS, 2 chains, each with 12000 iterations (first 5000 discarded), n.thin = 14 n.sims = 1000 iterations saved mean sd 2.5% 25% 50% 75% 97.5%...

...m(J, 0, 100), mu.theta = rnorm(1, 0, 100), sigma.theta = runif(1, 0, 100)) } parameters <- c("theta", "mu.theta", "sigma.theta") schools.sim <- bugs(data, inits, parameters, model.file, n.chains = 3, n.iter = 1000,bugs.directory = "/usr/local/share/WinBUGS14/", working.directory = "/tmp", clearWD = FALSE, useWINE=T, newWINE=T, WINE="/usr/bin/wine",WINEPATH="/usr/bin/winepath") I do have the binary "/usr/bin/winepath", but can't tell how to give R2WinBUGS what it wants. Many failed efforts below: &g...

...t;) bugs(dat, inits=list(NULL), parm, "d2.bug", n.chains = 1, n.iter = 5000, n.burnin = floor(n.iter/2), n.thin = max(1, floor(n.chains * (n.iter - n.burnin)/1000)), bin = (n.iter - n.burnin) / n.thin, debug = TRUE, DIC = TRUE, digits = 5, codaPkg = FALSE, bugs.directory = "C:/WinBUGS14/", working.directory = NULL, clearWD = FALSE) The objective of the program is to compare means of two independent samples that results in Beherens-Fisher posterior and in the model.file of WinBUGS "d2.bug" there is the following codes: model { for( i in 1 : 30 ) {...

...a","beta","beta0","y.star") fitm <- bugs(data,inits,parameters,model.file="model.bug", n.chains=3, n.iter=n.iter, n.burnin=n.burnin, n.thin = n.thin, debug=FALSE,DIC=FALSE,digit=5,codaPkg=FALSE, bugs.directory="C:/Program Files/WinBUGS14/") but I always get the following error: Error in FUN(X[[1L]], ...) : .C(..): 'type' must be "real" for this format I tried the web, but failed. Could anyone give me a clue? Best! -- View this message in context: http://www.nabble.com/WinBUGS-with-R-tp19108557p1910855...

...esbury.sim <- bugs(data="Wednesbury.data", > inits="Wednesbury.inits", parameters="Wednesbury.parameters", > model.file="p:/Wednesbury09/Wednesbury.bug", n.chains=1, > n.burnin=1000, n.sims=10000, bugs.directory="c:/Program > Files/WinBUGS14/", program="WinBUGS", debug=TRUE) Error in FUN(X[[1L]], ...) : .C(..): 'type' must be "real" for this format > This problem was discussed before (https://stat.ethz.ch/pipermail/r-help/2008-August/171726.html), but the discussion didn't seem to help m...