search for: weinberger

Hi, I am using the gap R package to do the Hardy Weinberg Case Control test for many SNP. I am not sure what the values initial1 and initial2 should be for the test. I tried values but they failed. I emailed the author but to no avail. There seems to be some documentation that is deleted at the top, if anyone can direct me how to get this I will be grateful. -- Thanks, Jim. [[alternative HTML

Hello all, I am interested in simulating 10,000 2 x 3 tables for SNPs data with the Hardy Weinberg formulation. Is there a quick way to do this? I am assuming that the minor allelle frequency is uniform in (0.05, 0.25). -- Thanks, Jim. [[alternative HTML version deleted]]

...c /path/to/bogofilter.cf Images seem to come through fine. I didn't have this problem before the upgrade. It could easily be a problem with bogofilter, but I figured that I'd check here first to see if anybody else has an attachment-mangling issue with vnd.dovecot.filter. # Adam -- Adam Weinberger adamw at adamw.org http://www.adamw.org

> On 19 Jan, 2018, at 4:39, Aki Tuomi <aki.tuomi at dovecot.fi> wrote: > > > > On 19.01.2018 04:35, Adam Weinberger wrote: >> Since upgrading to 2.3.0 / 0.5.0.1, incoming PDFs are getting mangled. >> It seems to be happening when I use vnd.dovecot.filter. When I comment >> out the block, things come through fine. >> >> My filter block looks like this: >> require "v...

Op 1/20/2018 om 11:01 PM schreef Adam Weinberger: >> On 20 Jan, 2018, at 10:05, Adam Weinberger <adamw at adamw.org> wrote: >> >> >>> On 19 Jan, 2018, at 4:39, Aki Tuomi <aki.tuomi at dovecot.fi> wrote: >>> >>> >>> >>> On 19.01.2018 04:35, Adam Weinberger wrote: >>&g...

Hello, I am trying to simulate 10 relicates of 100-tables. Each table is a 2 x 3 and 80% pf the tables are true nulls and 20% are non-nulls. The nulls follow the Hardy Weinberg distribution (ratio) 1:2:1. I have the code below but the p-values are not what I am expecting. I want to use the Cochran Armitage trend test to get the p-values. num.reps=10 num.vars=1000 pi0 = 80 num.subjects = 100

To save anyone else 30 seconds, here's how google translates the below: Ladies and Gentlemen, I would like to inform me whether there is the possibility of security certificates for R packages are. Sincerely, Christopher W. Weinberger 2011/8/26 Christoph W. Weinberger <cweinber@edu.uni-klu.ac.at> > Sehr geehrte Damen und Herren, > > ich würde mich gerne informieren, ob es die Möglichkeit gibt > Sicherheitszertifikate für R-Pakete gibt. > > Mit freundlichen Grüßen > > Christoph W. Weinberger > &...

https://bugs.freedesktop.org/show_bug.cgi?id=32855 Summary: Incorrect image stretching with Render in RepeatPad mode, NV50 Product: xorg Version: git Platform: x86-64 (AMD64) OS/Version: Linux (All) Status: NEW Severity: normal Priority: medium Component: Driver/nouveau

> On 21 Dec, 2017, at 14:37, Stephan Bosch <stephan at rename-it.nl> wrote: > > Op 12/19/2017 om 8:41 AM schreef Adam Weinberger: >> I'm getting a behaviour with pigeonhole that I wasn't expecting. Am I >> misunderstanding the design? >> >> I run my messages through a vnd.dovecot.filter. It's essentially this: >> >> filter "spam_filter"; >> if spamheaders { >...

https://bugs.freedesktop.org/show_bug.cgi?id=91705 Bug ID: 91705 Summary: [NVE7] GPU crash (read fault) on boot w/ DMI+HDMI outputs Product: xorg Version: unspecified Hardware: x86-64 (AMD64) OS: Linux (All) Status: NEW Severity: normal Priority: medium Component:

...ut the implicit-keep message is the original, unfiltered message. If I add an explicit `keep;` to the end, it stores the filtered version into my inbox. Based on the filter RFC, I was expecting the implicit keep to retain the filtered version. Am I misinterpreting the spec? # Adam -- Adam Weinberger adamw at adamw.org http://www.adamw.org

> On 20 Jan, 2018, at 10:05, Adam Weinberger <adamw at adamw.org> wrote: > > >> On 19 Jan, 2018, at 4:39, Aki Tuomi <aki.tuomi at dovecot.fi> wrote: >> >> >> >> On 19.01.2018 04:35, Adam Weinberger wrote: >>> Since upgrading to 2.3.0 / 0.5.0.1, incoming PDFs are getting mangled. >&gt...

Op 1/21/2018 om 4:34 PM schreef Stephan Bosch: > Op 1/20/2018 om 11:01 PM schreef Adam Weinberger: >>> On 20 Jan, 2018, at 10:05, Adam Weinberger <adamw at adamw.org> wrote: >>> >>> >>>> On 19 Jan, 2018, at 4:39, Aki Tuomi <aki.tuomi at dovecot.fi> wrote: >>>> >>>> >>>> >>>> On 19.01.2018 04:35, A...

At 12:44 AM 9/12/2003 -0400, Adam Weinberger wrote: >New categories are added slowly to the cvsup category lists. It's best >to cvsup using ports-all, and add the directories you don't want (such >as languages: "ports/french*" etc.) to the refuse file. How is having a refuse file slowing down CVSup down best? The...

> On 1 Jul, 2016, at 10:52, Timo Sirainen <tss at iki.fi> wrote: > > On 01 Jul 2016, at 19:39, Adam Weinberger <adamw at adamw.org> wrote: >> >> Hi, >> >> 2.2.25 crashes on FreeBSD with a kqueue-related message. I see references to something similar (http://www.dovecot.org/list/dovecot/2012-February.txt) from a couple years ago. >> >> I get: >> Jul 1 10:07...

Dear All, I am trying to calculate the Hardy-Weinberg Equilibrium p-value for 42 SNPs. I am using the function HWE.exact from the package "genetics". In order not to do a lot of coding "by hand", I have a for loop that goes through each column (each column is one SNP) and gives me the p.value for HWE.exact. Unfortunately some SNP have reached fixation and HWE.exact requires a

I'm trying to persuade llvm (svn trunk) to build in a mode where it *runs on* amd64 but *generates code* for alpha, exclusively. (Well, technically, generate code for my experimental architecture simulator that happens to be based on alpha.) I have been unable to find any combination of configure switches that makes this happen. I should probably underline that I am _not_ trying to

On Fri, Mar 13, 2009 at 6:09 PM, Bill Wendling <isanbard at gmail.com> wrote: > On Fri, Mar 13, 2009 at 4:41 PM, Zack Weinberg <zackw at panix.com> wrote: >> I'm trying to persuade llvm (svn trunk) to build in a mode where it >> *runs on* amd64 but *generates code* for alpha, exclusively. ... >>  - The "natural" way to do that (by which I mean

On Mon, Mar 16, 2009 at 11:25 AM, Chris Lattner <clattner at apple.com> wrote: > Hi Zack, welcome! I regret to say I'm disappearing again. I was only looking at LLVM for a class project which is now done with, and I'm not really interested in compiler development for the fun of it anymore. I do want to respond to some of the things that you (and others) said... > On Mar 13,

Hi, I have a genotype data for both case and controls and would like to calculate the HW p-value. However, since the number of one genotype is 0, I got wired result. Would someone help me to figure it out? Or confirm it's right? Thanks a lot. ============ > library( "genetics" ) NOTE: THIS PACKAGE IS NOW OBSOLETE. The R-Genetics project has developed an set of enhanced