search for: wd188

I am having trouble compiling R-2.6.2 on suse linux x86_64 using the intel compiler. I read section C.2.1 Intel compilers in the R Installation and Administration manual, and put CC=icc CFLAGS="-g -O3 -wd188 -ip" F77=ifort FFLAGS="-g -O3" ICC_LIBS=/opt/intel/cce/10.1.012/lib IFC_LIBS=/opt/intel/fce/10.1.012/lib/ LDFLAGS="-L$ICC_LIBS -L$IFC_LIBS -L/usr/lib64" CXX=icpc CXXFLAGS="-g -O3" FC=ifort FCFLAGS="-g -O3 -mp" in my config.site. Everything seems to com...

...-fpic -g -O3 -fp-model precise -c Gif2R.cpp -o Gif2R.o icpc -I/apps/R/3.1.3-intel/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O3 -fp-model precise -c GifTools.cpp -o GifTools.o icc -std=gnu99 -I/apps/R/3.1.3-intel/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O3 -wd188 -ip -fp-model precise -c runfunc.c -o runfunc.o icpc -L/usr/local/lib64 -o caTools.so Gif2R.o GifTools.o runfunc.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o: In function `_start': (.text+0x20): undefined reference to `main' Gif2R.o: In function `imwritegif': /tmp/...

...-model precise -c Gif2R.cpp -o Gif2R.o >> icpc -I/apps/R/3.1.3-intel/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O3 -fp-model precise -c GifTools.cpp -o GifTools.o >> icc -std=gnu99 -I/apps/R/3.1.3-intel/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O3 -wd188 -ip -fp-model precise -c runfunc.c -o runfunc.o >> icpc -L/usr/local/lib64 -o caTools.so Gif2R.o GifTools.o runfunc.o >> /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o: In function `_start': >> (.text+0x20): undefined reference to `main' >> Gif2R.o:...

...-O3 -fp-model precise -c Gif2R.cpp -o Gif2R.o > icpc -I/apps/R/3.1.3-intel/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O3 -fp-model precise -c GifTools.cpp -o GifTools.o > icc -std=gnu99 -I/apps/R/3.1.3-intel/lib64/R/include -DNDEBUG -I/usr/local/include -fpic -g -O3 -wd188 -ip -fp-model precise -c runfunc.c -o runfunc.o > icpc -L/usr/local/lib64 -o caTools.so Gif2R.o GifTools.o runfunc.o > /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o: In function `_start': > (.text+0x20): undefined reference to `main' > Gif2R.o: In function `im...

Hi all, I have the issue: icc -std=c99 -std=gnu11 -I../../src/extra -I../../src/extra/xdr -I. -I../../src/include -I../../src/include -I/usr/local/include -I../../src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -g -O3 -wd188 -ip -mp -c eval.c -o eval.o arithmetic.c(66): warning #274: declaration is not visible outside of function int matherr(struct exception *exc) ^ arithmetic.c(68): error: pointer to incomplete class type is not allowed switch (exc->type) { ^ arithmetic...

...18:47, Giuseppe Cal? wrote: >> Hi all, >> I have the issue: >> >> icc -std=c99 -std=gnu11 -I../../src/extra -I../../src/extra/xdr -I. >> -I../../src/include -I../../src/include? -I/usr/local/include >> -I../../src/nmath -DHAVE_CONFIG_H?? -fopenmp -fpic? -g -O3 -wd188 -ip >> -mp? -c eval.c -o eval.o >> arithmetic.c(66): warning #274: declaration is not visible outside of >> function >> ?? int matherr(struct exception *exc) >> ????????????????????? ^ >> >> arithmetic.c(68): error: pointer to incomplete class type is not...

...we build R with the Intel compilers and MKL on CentOS 6.x, with different versions of R (latest version: 3.2.1) and Intel compilers (latest version: 2015.3) on Intel SandyBridge CPUs: fast="-ip -O3 -opt-mem-layout-trans=3 -xHost -mavx" export CC="icc" export CFLAGS="$fast -wd188 -fp-model precise" export F77="ifort" export FFLAGS="$fast -fp-model precise" export CXX="icpc" export CXXFLAGS="$fast -fp-model precise" export FC="ifort" export FCFLAGS="$fast -fp-model precise" ./configure --prefix=$destdir --with...

...we build R with the Intel compilers and MKL on CentOS 6.x, with different versions of R (latest version: 3.2.1) and Intel compilers (latest version: 2015.3) on Intel SandyBridge CPUs: fast="-ip -O3 -opt-mem-layout-trans=3 -xHost -mavx" export CC="icc" export CFLAGS="$fast -wd188 -fp-model precise" export F77="ifort" export FFLAGS="$fast -fp-model precise" export CXX="icpc" export CXXFLAGS="$fast -fp-model precise" export FC="ifort" export FCFLAGS="$fast -fp-model precise" ./configure --prefix=$destdir --with...

...comments about -fp-model precise and -ipo. It might no longer be a problem, but maybe worth checking. fast="-ip -O3 -qopt-mem-layout-trans=3 -xHost -mavx" ## Notes: ## -static and -ipo break compilation ## -no-prec-div breaks make check ## -fp-model precise is needed for make check ## -wd188 removes a lot of warnings (see R Inst. & Adm. manual) export CC="icc" export CFLAGS="$fast -wd188 -fp-model precise" export F77="ifort" export FFLAGS="$fast -fp-model precise" export CXX="icpc" export CXXFLAGS="$fast -fp-model precise"...

...-threaded ? ========================================================================================================= CMP_LIB_PATH=/opt/intel/lib/intel64 MKL_LIB_PATH=/opt/intel/composerxe/mkl/lib/intel64 INC_LIB_PATH=/usr/local/lib export CC="icc -std=c99" export CFLAGS="-g -O3 -wd188 -ip" export F77=ifort export FFLAGS="-g -O3" export CXX=icpc export CXXFLAGS="-g -O3" export FC=ifort export FCFLAGS="-g -O3" export SHLIB_CXXLD=icpc export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MKL_LIB_PATH}:${INC_LIB_PATH}:${CMP_LIB_PATH} export LDFLAGS="-L...

...AGS="-fast -unroll" CXX=icpc CXXFLAGS="-fast -unroll" FC=ifort FCFLAGS="-fast -unroll" LDFLAGS="-L$ICC_LIBS -L$IFC_LIBS -L/usr/local/lib64" SHLIB_CXXLD=icpc ../configure --prefix=/N/u/mkimpel/Quarry/R_HOME/R-patched/R-build\ CC=icc CFLAGS="-fast -unroll -wd188" F77=ifort FFLAGS="-fast -unroll" \ CXX=icpc CXXFLAGS="-fast -unroll" FC=ifort FCFLAGS="-fast -unroll" \ ICC_LIBS=/N/soft/linux-rhel4-x86_64/intel/cce/10.1.013/lib \ IFC_LIBS=/N/soft/linux-rhel4-x86_64/intel/fce/10.1.013/lib \ LDFLAGS="-L$ICC_LIBS -L$IFC_LIBS...

I want to build R optimized, with either MKL, OpenBLAS or ATLAS. My OS: Fedora 22 Hardware: CPU op-mode(s): 32-bit, 64-bit Byte Order: Little Endian CPU(s): 8 Thread(s) per core: 2 Vendor ID: GenuineIntel Model name: Intel(R) Core(TM) i7-2600K CPU @ 3.40GHz I am a little confused when it comes to choose a method and would like to hear your experiences. If I am right, I have 3 possibilities: -

After a few days of reading and headache, I finally gave a try at building R from source with Intel MKL and ICC. Documentation and posts on this topic are rather incomplete, sometime fantasist et do not give much explanations about configure options. As I am not sure if mine is correct, I would appreciate some advices and hints. OS: Fedora 22 parallel_studio_xe_2016 Hardware : 8 Thread(s) per

...going well, but at one point make complains: make[2]: Entering directory '/home/poisonivy/rpmbuild/BUILD/R-3.2.1/src/unix' icc -std=c99 -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -fpic -ip -O3 -opt-mem-layout-trans=3 -xHost -mavx -fp-model precise -wd188 -DMKL_ILP64 -qopenmp -parallel -I/opt/intel/compilers_and_libraries_2016.0.109/linux/mkl/include -Wl,-z,relro -DR_HOME='"/usr/lib64/R"' \ -o Rscript ./Rscript.c make[2]: icc: Command not found Weird, as i had same line many times before with no complain. E.g: icc -std=c99 -I....

Hi there, I initially asked about this on r-help and was told this might be a better venue. I?m not really convinced from reading the posting guide, but I?ll give it a shot. It was also suggested that the R-Project doesn?t really care about building with ?non-standard? compilers, but I can?t find any evidence of that on the website (indeed, there?s some mention of successful past builds, and the

I want to create a clean .rpm package for R built with MKL and ICC. I follow Fedora instrcutions[0] to create the package. As a base, I use the R-3.2.2.src.rpm. I am left with this error: ------------------------------------------ installing R info pages ... updating '/usr/share/info/dir' ... make[1]: Leaving directory '/home/poisonivy/rpmbuild/BUILD/R-3.2.2/doc/manual' + mv

...t up my environment variables in profile.d, using the handy scripts found here: https://lists.sdsc.edu/pipermail/npaci-rocks-discussion/2005-November/015012.html (although I added the icpc variable myself). 3: Set up config.site as follows (mostly taken from the guide): CC=icc CFLAGS="-g -O3 -wd188 -ip" CPPFLAGS="-no-gcc" F77=ifort FLAGS="-g -O3" CXX=icpc CXXFLAGS="-g -O3" FC=ifort FCFLAGS="-g -O3 -mp" ICC_LIBS=/opt/intel/cce/10.1.015/lib/ IFC_LIBS=/opt/intel/fce/10.1.015/lib/ LDFLAGS="-L$ICC_LIBS -L$IFC_LIBS -L/usr/local/lib64" SHLIB_CXX...

...ernal one insted. I asked why, and was told it was intentional. Now, with R 2.15.1, I see that it at least appears that this is no longer the case. I've run configure like this: fast="-ip -O3 -opt-mem-layout-trans=3 -xHost -mavx" export CC="icc" export CFLAGS="$fast -wd188 -fp-model precise" export F77="ifort" export FFLAGS="$fast -fp-model precise" export CXX="icpc" export CXXFLAGS="$fast -fp-model precise" export FC="ifort" export FCFLAGS="$fast -fp-model precise" ./configure --with-blas='-mkl=pa...

...rnal one insted. I asked why, and was told it was intentional. Now, with R 2.15.1, I see that it at least appears that this is no longer the case. I've run configure like this: fast="-ip -O3 -opt-mem-layout-trans=3 -xHost -mavx" export CC="icc" export CFLAGS="$fast -wd188 -fp-model precise" export F77="ifort" export FFLAGS="$fast -fp-model precise" export CXX="icpc" export CXXFLAGS="$fast -fp-model precise" export FC="ifort" export FCFLAGS="$fast -fp-model precise" ./configure --with-blas='-mkl=pa...

...not strictly needed for building agains MKL.) > > > We also try to optimise the build by setting some environment variables > before running configure: > > fast="-ip -O3 -opt-mem-layout-trans=3 -xHost -mavx" > export CC="icc" > export CFLAGS="$fast -wd188 -fp-model precise" > export F77="ifort" > export FFLAGS="$fast -fp-model precise" > export CXX="icpc" > export CXXFLAGS="$fast -fp-model precise" > export FC="ifort" > export FCFLAGS="$fast -fp-model precise" > &g...