search for: waller

...hg","pathh")) I am stuck and have tried various methods involving (probably mangled) versions of lappy and loops. Any suggestions on the most efficient way to do this would be great. Thanks, Alison Here is my latest attempt. ##### line_num<-length(scan(file="/g/bork8/waller/ test_COGtoPath.txt",what="character",sep="\n")) COG2Path<-vector("list",line_num) COG2Path<-lapply(1:(line_num-1),function(x) scan(file="/g/bork8/waller/ test_COGtopath.txt",skip=x,nlines=1,quiet=T,what='character',sep="\t"))...

Has anyone had success building a package on a windows machine? I am trying the following command with no luck (perhaps my flags are incorrect?). At this point I am stuck. Any help greatly appreciated. Niels Waller (BTW - I have no idea why it cannot find sh.exe since I have it is a directory that is specified in a path statement) H:\R\bin>rcmd build --binary --use-zip h:\taxon2 * checking for file 'h:\taxon2/DESCRIPTION' ... OK make: Entering directory `/cygdrive/h/R/src/gnuwin32' make DLLN...

...vide a suggestion? Thanks in advance. win3 <- function(...) { system(...) } [a zillion lines of code here ] notepad.file <- paste("notepad", outFile, sep = " ") win3(notepad.file) 0=================================================0 Dr. Niels G. Waller Quantitative Methods Department of Psychology and Human Development Box 512 Peabody College Vanderbilt University Nashville TN 37203 email: niels.waller at vanderbilt.edu fax: 615 343-9494 QME home page: http://www.vanderbilt.edu/quantmetheval http://peabody.vanderbilt.edu/depts/psych_and_hd/fa...

R colleagues, I am stumped. I would like the inter-tick distances to be the same on the x and y axes but cannot determine how to do so when the lower half of the y axis is not printed. Thanks for any and all suggestions. (btw, setting par(pty="s") does not solve my problem) Niels Waller M<-matrix(c(2,1, -1,3),2,2,byrow=TRUE) dimnames(M)<-list(c("P1","P2"),c("V1","V2")) writeLines(text=c("\n","Matrix M")) print(M) plot(c(-4,4),c(0,4),type="n",xlim=c(-3,3),axes=FALSE,xlab="",ylab=&q...

...[,1] [,2] [,3] [1,] 0 1 2 [2,] 0 0 0 [3,] 0 2 1 [4,] 0 0 0 [5,] 0 1 2 [6,] 0 0 0 [7,] 0 2 1 [8,] 0 0 0 [9,] 0 1 2 [10,] 0 0 0 Thank you for any and all help. (I am using 1.5.0 on Windows NT) Niels Waller -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-help-request at stat...

Hi, I guess this might be a FAQ or something, and there's probably a nice simple way to do it, but I can't think of it: Given a matrix, I want to remove columns that are _entirely_ filled with NAs (partial NAs are fine). How please? Thanks, Martin

...t;build" file (which appears to be a perl script) is looking for a "src" subdirectory in the src directory? [which, of course, does not exist]. I am using rw1081 with the latest ActiveState Perl and tools (from Ripley) installed Any help would be greatly appreciated Thanks, Niels Waller niels.waller@vanderbilt.edu ******* my bat file ********** set TMPDIR=h:\TEMP set path=d:\Latex\texmf\miktex\bin;h:\bin;h:\R\rw1081\bin;g:\Perl\bin; R\rw1081\bin; rcmd build --binary --use-zip taxon **** end of my bat file ***** ***my error messages ****** H:\R\rw1081\src\gnuwin32>rcm...

...e please help me with the following error message "Error in parse(file, n, text, prompt) : syntax error on line 1)" I have searched the "Creating R packages" manual but have been unable to determine how to solve my problem. Thank you in advance for any and all help. Niels Waller Vanderbilt University H:\R\rw2001\src\gnuwin32>rcmd build --binary --use-zip taxon * checking for file 'taxon/DESCRIPTION' ... OK installing R.css in h:/TEMP/Rbuild.1020 ---------- Making package taxon ------------ adding build stamp to DESCRIPTION installing R files installing...

On 18/12/2019 21:49, Eric Christopher wrote: > Yes, I looked through those sources and a number of my questions > around which clang versions have been supported and directory > structure. I think the only difference is removing the direct > questions about earlier flang, but I still don't see code generation > or uses of llvm libraries that would conform to "written in

Hello, I'm having some difficulty running Niels Waller's Maxcov Hitmax program in the R console, and I was hoping you could provide me with some assistance. When I attempt to run the analysis I receive the following message: Indicators 1 3 & 2Error in if (del == 0 && to == 0) return(to) : missing value where TRUE/FALSE needed I conta...

...1.0, namely 0.99.10.8 (openbsd port). It could be I have something misconfigured, for openbsd supports kerberos and most programs which use the operating system's auth features use kerberos transparently through login(1). If there is a patch, I would be very interested in testing it. -- John Waller ganreshnu at gmail.com

...elp files (with an Rd extension). However when I look at other libraries I do not find a man subdirectory (I find html dirs). Also I am told to include a keyword from the KEYWORDS.db. However this file is not on my system? Any suggestions? I am working with R 1.5 on windows NT thank you Niels Waller -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-help-request at sta...

...ble adding Greek symbols to a plot. I want to mix Roman text and Greek -- but they keep fighting! Pseudo code for what I want: [Greek] gamma [subscript]1 = [Roman] Threshold 1 I have conducted a search on the CRAN FAQ list, but no luck. Any and all hints would be GREATLY appreciated. Niels Waller Department of Psychology and Human Development Vanderbilt University niels.waller at vanderbilt.edu -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", o...

...s)[xx]) plot(xpoints[xx], xheights[xx], ylim = c(0, trials/2), type = "h", main = paste("Trials = ", j, sep = ""), ylab = "Frequency", xlab = "X") guiLocator(-1) } } ******************************************************************** Niels Waller, Ph.D. Associate Professor Address: One Shields Avenue Phone: (530) 752-4459 Department of Psychology University of California Davis, CA 95616 Internet: http://psychology.ucdavis.edu/waller/default.html ******************************************************************** -.-.-.-.-.-.-.-.-...

...3,4,and 6). However, I can't believe that there is only one gene that is in the top 500 for R intensitiy among those three arrays. Am I doing something wrong? Can someone think of a better way of doing this? Thanks Alison ****************************************** Alison S. Waller M.A.Sc. Doctoral Candidate awaller@chem-eng.utoronto.ca 416-978-4222 (lab) Department of Chemical Engineering Wallberg Building 200 College st. Toronto, ON M5S 3E5 [[alternative HTML version deleted]]

Hi all, I have 6 datasets(dataframes Assem_ContigsLen7 through all_ContigsLen12) containing 3 columns (contig_id, contig_length, read_count). Each dataset is composed of 3 types of contigs (assemblies of genomic fragments), 1- all Bacterial fragments, 2 - all Viral fragments, 3 - mixed fragments. I identified the type of contig through a merge with another table with just contig_id and

...et rather than wait until the function has completed all calculations). Does anyone know if there is a trick that will enable me to accomplish the same thing in R (for Windows). Many thanks for any and all help Niels ******************************************************************** Niels Waller, Ph.D. Associate Professor Address: One Shields Avenue Phone: (530) 752-4459 Department of Psychology University of California Davis, CA 95616 Internet: http://psychology.ucdavis.edu/waller/default.html ******************************************************************** -.-.-.-.-.-.-.-.-...

Is there anyway to change the color of the text when using writeLines? I would like to write a red error message to the screen. thanks for any leads. Niels Waller -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-help-request at sta...

Hi all, I'm having problems installing plotrix. I tried installing it through install.packages, and from the unix command line, but each time it seems to stall when it is installing the help indices. has anyone had this same problem, is this package still maintained ? any help? thanks > install.packages("plotrix") > > I also tried using the source package > R CMD

The (slow) SOM code can be found on my web page (towards the bottom) http://peabody.vanderbilt.edu/depts/psych_and_hd/faculty/wallern/ On Thu, 1 Mar 2001, John Aitchison wrote: > > Is there an implementation of the SOM ('Self Organizing Map') procedure in > R ? > > I am aware of the implementations of Sammon mapping, multidimensional > scaling and, somewhat peripherally, principal curves and projecti...