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...Instead, I have been making repeated function calls using a loop in Perl, to access other R and Bioconductor functions that I need such as t.test and ANOVA. This is very time-consuming, however. I am working in a Linux environment, and using R 2.1.0 Thanks for any help and suggestions! Mugdha Wagle ________________________________ From: Sean Davis [mailto:sdavis2 at mail.nih.gov] Sent: Fri 6/3/2005 8:03 AM To: Wagle, Mugdha Cc: r-help at stat.math.ethz.ch Subject: Re: [R] reading tables into R. . On Jun 3, 2005, at 8:40 AM, Wagle, Mugdha wrote: > I have been using R and Perl. When...

...o much time(basically, I then need to read in values individually into R instead of as a 2D array, so the number of function calls from Perl to R is very large). Could you suggest another method whereby I could read an entire matrix or a file using an R function call? Thanks! Sincerely, Mugdha Wagle, Hartwell center for Bioinformatics and Biotechnology, St.Jude Children's Research Hospital

I have passwords turned off, and require keys to match. The zombie armies swarming outside are trying brute force attacks that in part involve guessing login NAMES. If they guess the wrong NAME, this is logged in syslog. If they guess a working user name, then the attack has PARTIALLY SUCCEEDED, but this information is IGNORED. That is, it is not logged. If the zombie army has tell when it

...l me what the function is called, and how I can get hold of the code(since I believe affy only works on CEL files) ? I have downloaded the affy R code from Terry Speed's website already, but I don't know where (if at all) the code to perform PCA is. Thank you everyone! Sincerely, Mugdha Wagle Hartwell Center for Bioinformatics and Biotechnology, St.Jude Children's Research Hospital, Memphis TN 38105

...what I had expected, after seeing the outputs in the case of simpler functions like sum. Could anyone please tell me how I can obtain the output I expect(i.e. the same as the command line output....giving values of t, p-value and the means)? Thank you very much for the help!! Sincerely, Mugdha Wagle Hartwell Center for Bioinformatics and Biotechnology, St.Jude Children's Research Hospital, Memphis TN 38105