Displaying 20 results from an estimated 29 matches for "vignettebuilder".
2014 Jul 11
1
proposed change of check message when VIgnetteBuilder package is not declared as a dependency
Hi,
I notice in R-3.1.1, if a package specifies a VignetteBuilder (such as knitr) in its DESCRIPTION file, but
does not also depend on the specified package (in either Depends, Imports, or Suggests), that R CMD check will say:
* checking package dependencies ... ERROR
VignetteBuilder package not declared: ?knitr?
I'm glad this situation is now caught by R C...
2013 Feb 13
1
VignetteBuilder: Unlike other package fields, it does not support version specifiers
Just an observation/FYI on the new DESCRIPTION field 'VignetteBuilder'
available in R devel:
Unlike other package fields (Depends, Imports and Suggests),
VignetteBuilder does not support version specifiers, e.g.
VignetteBuilder: R.rsp (>= 0.8.2)
but only
VignetteBuilder: R.rsp
If adding a version specifier, 'R CMD build' complaints with an:
** in...
2014 Aug 25
1
vignette index going AWOL
...2014-08-21 r66456)
* using platform: x86_64-apple-darwin13.1.0 (64-bit)
* using session charset: UTF-8
* checking extension type ... Package
* this is package ?fastR? version ?0.8-0?
* checking CRAN incoming feasibility ... NOTE
Maintainer: ?Randall Pruim <rpruim at calvin.edu>?
Package has a VignetteBuilder field but no prebuilt vignette index.
NOTE: There was 1 note.
$ tar -tf fastR_0.8-0.tar.gz | grep inst/doc
fastR/inst/doc/
fastR/inst/doc/Errata.Rnw
fastR/inst/doc/Errata.pdf
fastR/inst/doc/Updates.R
fastR/inst/doc/Updates.Rnw
fastR/inst/doc/Updates.pdf
fastR/inst/doc/index.html
There is an index...
2013 Aug 23
2
packages with Sweave and knitr vignettes?
...nw weave = knitr
%\VignetteEngine{knitr::knitr}
...
both are .Rnw files, distinguished only by \VignetteEngine. vign1.Rnw is
currently in my
package, and vign2.Rnw compiles OK outside it, using knitr in an R
console or RStudio.
R-exts implies that the DESCRIPTION file must include (minimally):
VignetteBuilder: Sweave, knitr
Suggests: knitr
Is anything more/different required? Does a package exist that does this?
TIA
-Michael
--
Michael Friendly Email: friendly AT yorku DOT ca
Professor, Psychology Dept. & Chair, Quantitative Methods
York University Voice: 416 736-2100 x66249 Fax: 416 7...
2018 Sep 18
2
Suggested Patch: Adding commas to list of packages after R CMD check
...39; 'ggfortify' 'reshape2' 'rlang' 'loose.rock'
Packages suggested but not available:
'testthat' 'knitr' 'rmarkdown' 'survcomp' 'pROC' 'devtools'
'VennDiagram' 'BiocStyle' 'curatedTCGAData'
VignetteBuilder package required for checking but not installed: 'knitr'
The suggested packages are required for a complete check.
Checking can be attempted without them by setting the environment
variable _R_CHECK_FORCE_SUGGESTS_ to a false value.
See section 'The DESCRIPTION file' in the 'W...
2013 Jul 17
1
SweaveParseOptions, quoted commas, and knitr vignettes
I haven't figured it out entirely, but it looks like there are a
couple of small glitches with knitr-based vignettes and
SweaveParseOptions.
I posted the tarball of a package with a knitr vignette with (as far
as I can tell) everything properly coded in the DESCRIPTION file
(VignetteBuilder: knitr, Suggests: knitr) and the vignette itself
(%\VignetteEngine{knitr::knitr}). When Windows users (who may not
have had knitr installed) tried to install it from source, they
encountered an error from utils:::SweaveParseOptions .
The proximal source of the problem was a chunk header of the f...
2016 Apr 04
1
Suggested dependencies in context of R CMD check
..._ to a false value.
> >
> > should be sufficient to run *check* process without installing suggested
> deps.
> > If it is not true, then how to differentiate the suggested packages
> > which are optional from those mandatory?
> > It would be helpful to have kind of `vignetteBuilder` DESCRIPTION
> > field called `testChecker`, so DESCRIPTION file could precisely manage
> > packages dependencies.
> > That way batch checking packages would be easier, as required dep
> > metadata would be at hand in description file. Batch checking pkgs
> > with all...
2020 Nov 01
2
vignettes present in 2 folders or won't work
...ble in the tarball -- in the folder inst/doc and
vignettes; see below for details.
Details:
I am pre-compiling heavy vignettes thanks to the vignette builder R.rsp.
So basically, I have PDF files which I want the package to use as Vignettes.
For this, I have the following in my Description file:
VignetteBuilder: R.rsp
I am organising the vignette by hand using a Makefile (because this is the
only way that has proven 100% reliable to me, across a variety of
situations).
In my Makefile, I have something like:
build: clean
mkdir -p inst/doc
mkdir vignettes
-cp sources_vignettes/*/*.pdf* vignettes...
2013 Oct 15
1
discrepancy between r cmd check --as-cran and messages at submission
Dear r-devel list,
I've observed at both of my submissions that issues arise at submission
that were not pointed out by
R cmd check --as-cran
For example at my last submission:
You have
VignetteBuilder: knitr
but there is nothing looking like a vignette in your source package....
We also see:
* checking DESCRIPTION meta-information ... NOTE
Author field differs from that derived from Authors@R
Author: 'Corentin M Barbu <corentin.barbu@gmail.com> [aut, cre],
Sebastian Gibb <mai...
2016 Apr 02
3
Suggested dependencies in context of R CMD check
...tting the environment
variable _R_CHECK_FORCE_SUGGESTS_ to a false value.
should be sufficient to run *check* process without installing suggested deps.
If it is not true, then how to differentiate the suggested packages
which are optional from those mandatory?
It would be helpful to have kind of `vignetteBuilder` DESCRIPTION
field called `testChecker`, so DESCRIPTION file could precisely manage
packages dependencies.
That way batch checking packages would be easier, as required dep
metadata would be at hand in description file. Batch checking pkgs
with all their suggests will simply result into testing who...
2014 Dec 09
2
UTF8 markdown vignette
...,
Thierry
Details:
Using 64-bit R 3.1.2 with encoding = "native.enc" on Windows 7 with Rstudio 0.97.1091.
The source packages is build using the devtools package. The build command is R --vanilla CMD build "myPackage" --no-manual --no-resave-data
The DESCRIPTION file has
VignetteBuilder: knitr
Suggests: knitr
Imports: rmarkdown
The markdown vignette YAML contains
vignette: >
%\VignetteEngine{knitr::rmarkdown}
%\VignetteIndexEntry{The title}
\usepackage[utf8]{inputenc}
The custom output style converts the markdown to beamer with the --latex-engine = xelatex flag.
The vi...
2020 Jun 22
4
R 4.0.2 is released
...cfbe9180dba09ccb9efb17298b067309eb799e92e VERSION-INFO.dcf
d3bceab364da0876625e4097808b42512395fdf41292f4915ab1fd257c1bbe75 R-4/R-4.0.2.tar.gz
This is the relevant part of the NEWS file
CHANGES IN R 4.0.2:
UTILITIES:
* R CMD check skips vignette re-building (with a warning) if the
VignetteBuilder package(s) are not available.
BUG FIXES:
* Paths with non-ASCII characters caused problems for package
loading on Windows PR#17833.
* Using tcltk widgets no longer crashes R on Windows.
* source(*, echo=TRUE) no longer fails in some cases with empty
lines; reported by...
2014 Jun 14
1
Should a package that indirectly Suggests: a vignette engine pass R CMD check?
...table) (2014-06-13 r65941)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ?genefilter/DESCRIPTION? ... OK
* this is package ?genefilter? version ?1.47.5?
* checking package namespace information ... OK
* checking package dependencies ... ERROR
VignetteBuilder package not declared: ?knitr?
See the information on DESCRIPTION files in the chapter ?Creating R
packages? of the ?Writing R Extensions? manual.
I interpret this to mean that knitr should be mentioned in Suggests: or other
dependency field. The package does not Suggests: knitr, but it does Sugg...
2018 Sep 18
0
Suggested Patch: Adding commas to list of packages after R CMD check
...hape2' 'rlang' 'loose.rock'
>
> Packages suggested but not available:
> 'testthat' 'knitr' 'rmarkdown' 'survcomp' 'pROC' 'devtools'
> 'VennDiagram' 'BiocStyle' 'curatedTCGAData'
>
> VignetteBuilder package required for checking but not installed: 'knitr'
>
> The suggested packages are required for a complete check.
> Checking can be attempted without them by setting the environment
> variable _R_CHECK_FORCE_SUGGESTS_ to a false value.
>
> See section 'The DESCR...
2013 Feb 15
1
Suggestion: Custom filename patterns for non-Sweave vignettes
..., weave=rspWeave, tangle=rspTangle,
patterns="[.]rsp$")
Argument 'patterns' could default to patterns=c("[.][RrSs](nw|tex)$",
"[.]Rmd$").
This is just a sketch/mock up and it may be that there are better
solutions. However, the idea is that when specify 'VignetteBuilder:
R.rsp' in DESCRIPTION of a package, R locates all engines registered
by the builder package. In this case it finds 'rsp'. (An alternative
to this lookup would be to use a DESCRIPTION field 'VignetteEngines:
R.rsp:rsp, knitr:knitr'.) It next looks for custom filename patterns...
2014 Dec 09
2
UTF8 markdown vignette
...3.1.2 with encoding = "native.enc" on Windows 7 with Rstudio 0.97.1091.
>
> The source packages is build using the devtools package. The build
> command is R --vanilla CMD build "myPackage" --no-manual
> --no-resave-data
>
> The DESCRIPTION file has
>
> VignetteBuilder: knitr
> Suggests: knitr
> Imports: rmarkdown
>
> The markdown vignette YAML contains
> vignette: >
> %\VignetteEngine{knitr::rmarkdown}
> %\VignetteIndexEntry{The title}
> \usepackage[utf8]{inputenc}
>
> The custom output style converts the markdown to beamer...
2014 Dec 09
4
UTF8 markdown vignette
...Rstudio 0.97.1091.
>>>
>>> The source packages is build using the devtools package. The build
>>> command is R --vanilla CMD build "myPackage" --no-manual
>>> --no-resave-data
>>>
>>> The DESCRIPTION file has
>>>
>>> VignetteBuilder: knitr
>>> Suggests: knitr
>>> Imports: rmarkdown
>>>
>>> The markdown vignette YAML contains
>>> vignette: >
>>> %\VignetteEngine{knitr::rmarkdown}
>>> %\VignetteIndexEntry{The title}
>>> \usepackage[utf8]{inputenc}
&...
2014 Dec 09
0
UTF8 markdown vignette
...-bit R 3.1.2 with encoding = "native.enc" on Windows 7 with Rstudio 0.97.1091.
>
> The source packages is build using the devtools package. The build command is R --vanilla CMD build "myPackage" --no-manual --no-resave-data
>
> The DESCRIPTION file has
>
> VignetteBuilder: knitr
> Suggests: knitr
> Imports: rmarkdown
>
> The markdown vignette YAML contains
> vignette: >
> %\VignetteEngine{knitr::rmarkdown}
> %\VignetteIndexEntry{The title}
> \usepackage[utf8]{inputenc}
>
> The custom output style converts the markdown to beam...
2016 Apr 04
0
Suggested dependencies in context of R CMD check
...riable _R_CHECK_FORCE_SUGGESTS_ to a false value.
>
> should be sufficient to run *check* process without installing suggested deps.
> If it is not true, then how to differentiate the suggested packages
> which are optional from those mandatory?
> It would be helpful to have kind of `vignetteBuilder` DESCRIPTION
> field called `testChecker`, so DESCRIPTION file could precisely manage
> packages dependencies.
> That way batch checking packages would be easier, as required dep
> metadata would be at hand in description file. Batch checking pkgs
> with all their suggests will simpl...
2020 Nov 01
0
vignettes present in 2 folders or won't work
...and
> vignettes; see below for details.
>
> Details:
>
> I am pre-compiling heavy vignettes thanks to the vignette builder R.rsp.
> So basically, I have PDF files which I want the package to use as Vignettes.
>
> For this, I have the following in my Description file:
> VignetteBuilder: R.rsp
>
> I am organising the vignette by hand using a Makefile (because this is the
> only way that has proven 100% reliable to me, across a variety of
> situations).
>
> In my Makefile, I have something like:
>
> build: clean
> mkdir -p inst/doc
> mkdir vig...