Displaying 2 results from an estimated 2 matches for "varcheck".
2011 Feb 04
1
GWAF package: lme.batch.imputed(): object 'kmat' not found
...39;,
genfile = 'CARe_imputed_release.0.fhsR.gz',
pedfile='pedfile.csv',
phen='phen1',
covar=c('covar1','covar2'),
kinmat='imputed_fhs.kinship.RData',
outfile='imputed.FHS.IBC.GWAF.LME.output.0.txt'
))
Gives the error messages:
Error in coxme.varcheck(ncluster, varlist, n, gvars, groups, sparse, rescale, :
object 'kmat' not found
Error in lme.cov.out$theta : $ operator is invalid for atomic vectors
Might anyone know why?
Thank you for your time!
Jim
---------------------------------------------------
> R.Version()
$platform
[1]...
2011 Apr 15
1
no solution yet, please help: extract p-value from mixed model in kinship package
...*******************************error
> message********************************************
> Error message:
Error in lmekin(yvar ~ mydata[, 3], data = mydata, random = ~1 | id, varlist
= list(kmat))$coefficients[2, :
incorrect number of dimensions
In addition: Warning message:
In coxme.varcheck(ncluster, varlist, n, gvars, groups, sparse, rescale, :
Diagonal of variance matrix is not constant
#**************************************ultimate target: to put in
loop*******************************
> Ultimately I want to put into the loop:
>
> for(i in 3:length(mydata)) {
>
>...