Displaying 1 result from an estimated 1 matches for "userargumentmismatch".
2010 Apr 27
2
ShortRead with BWA
..._HilbertVis.pdf)
which does mention that readAligned was extended to support SAM format
(for example, BWA output).
So I tried readAligned with
BWAAln <- readAligned(BWAFile, type = "BWA")
but then I got error:
> BWAAln <- readAligned(BWAFile, type = "BWA")
Error: UserArgumentMismatch
arugment 'type' had value 'BWA' allowable values: 'SolexaExport'
'SolexaAlign' 'SolexaPrealign' 'SolexaRealign' 'SolexaResult'
'MAQMap' 'MAQMapShort' 'MAQMapview' 'Bowtie' 'SOAP'
It looks l...