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Dear all, I am trying to use the Matrix package to do some calculations on rather large and sparse matrices. An example of such a matrix is given below. mig<-0.2 side<-10 np<-side^2 mig.mat<-matrix(0,np,np) diag(mig.mat[1:(np-side),(side+1):np])<-mig/4 diag(mig.mat[(side+1):np,1:(np-side)])<-mig/4 diag(mig.mat[-np,-1])<-mig/4

Hello R Help Team, I have created graph from weighted adjecency matrix .Is there a way I can find highly connected nodes in Igraph like the Package RBGL does. nathan -- View this message in context: http://www.nabble.com/Highly-Connected-Nodes-in-Igraph-tp22377522p22377522.html Sent from the R help mailing list archive at Nabble.com.

Hi, Trying to install the Solaris package I made after configure/compilation under Solaris 8. My configure settings --------------------- OpenSSH has been configured with the following options: User binaries: /usr/local/bin System binaries: /usr/local/sbin Configuration files: /usr/local/etc Askpass program: /usr/local/libexec/ssh-askpass

Dear colleagues, I'm trying to have a look at the Assortative and Disassortative ( http://en.wikipedia.org/wiki/Assortative_mixing) of the network I have. But it seems that the igraph hasn't mentioned that yet. I have to get the in/out degree of the vertices of each edge and calculate the Pearson's Correlation coefficient which seems to be quite a huge task for me. :( So I wonder if

Dear Luke and others, I have many R versions on my machine and want to start a particular one when snow builds its cluster. (The same version I start snow from.) It seems that everything is set up correctly in defaultClusterOptions: > mget(ls(defaultClusterOptions), defaultClusterOptions) $homogeneous [1] TRUE $manual [1] FALSE $master nodename "maya.unil.ch" $outfile [1]

I'm trying to draw an arrow with a curved shaft on the graph as a straight one looks messy on a detailed graph. I've looked in arrows but it doesn't seem to give an option. larrows doesn't look much more promising. I had a look in the archive and couldn't find anything. Any thoughts? Thanks Paul -- View this message in context:

Dear All, I would like to do run R without having write permissions to any directory on the system. It seems that I need to modify the R source code for this, to make R start without creating a temporary directory. So far, so good. But should I expect any more complications? Does R really need the temporary directory that much? Thanks, Gabor -- Gabor Csardi <Gabor.Csardi at unil.ch>

Dear all, "Writing R Extensions" explicitly says that A method must have all the arguments of the generic, including ... if the generic does. A method must have arguments in exactly the same order as the generic. If the generic specifies defaults, all methods should use the same defaults. This is clear. R CMD check even checks for this. But then how is it possible that

Hello, I just have two questions I cannot figure out. 1) I would like to have a subtitle just below the main title on my graphs and I cannot figure out how to do this, is it possible? or is it only possible to have it at the bottom? 2) I need to run Conova post hoc test, do you know if it is coded in R? any package I would find this test in? Thank you very much for all the help Have a nice

Hi all, I'm very new to R and read a few tutorials, however I'm having difficulty trying to figure out how to plot a minimum spanning tree. I have a csv file that contains an n-by-n matrix of distances between strains of bacteria called matrix.csv. Looks like: id,strain1, strain2,strain3 strain1,0,.2,.8 strain2,.3,0,.7 strain3,.4,.6,0 I've been messing around with some information

Hi Ben Thanks for your answer I have already tried this, as well as x <- as.POSIXct(strptime("2002-02-02 02:02", "%Y-%m-%d %H:%M")) It works! But it does not fix it widely for all tests used during the "make check" step at compile time. Unless I patch all of them. There is something with localtime but I cannot find what. On another machine with another

Hi All, How do I add "com" to the row names of a data frame, without deleting the plot numbers? Thanks

Hi R mailing list, probably a very basic problem here, I try to do the following: > Q<-c(1,2,3) > P<-c(4,5,6) > A<- data.frame(Q,P) > A Q P 1 1 4 2 2 5 3 3 6 this is my simplified data.frame (matrix) now I try to create following loop for subtraction of element within the data.frame: > for(i in length(A[,"P"]-1){ delta[i]<-

Hi, Is there a way to use regular expressions to capture two or more words in a sentence? For example, I wish to to find all the lines that have the words "thomas", "perl", and "program", such as "thomas uses a program called perl", or "perl is a program that thomas uses", etc. I'm sure this is a very easy task, I would greatly appreciate

Hi, Given a simple example, test <- matrix(c(0.1, 0.2, 0.1, 0.2, 0.1, 0.1, 0.3, 0.1, 0.1), 3, 3) How to generate row indexes for which their corresponding row values are less than or equal to 0.2 ? For this example, row 2 and 3 are the correct ones. Thanks [[alternative HTML version deleted]]

Hello I am a relatively new user of R and am struggling to use the 'network' package. I have a correlation matrix (produced using 'cor'), and want to draw a network where each item showing correlation above a threshold (say 0.5) is joined by a green line, and each item showing correlation below a threshold (say -0.5) is joined by a red line. Does anyone have any hints of how to

useR's, Consider: y <- c(20, 25, 30) > m <- matrix(c(0.0,1,NA,0.5,1.25,0.75, 0.5, NA, > NA),byrow=TRUE,nrow=3,ncol=3) > m [,1] [,2] [,3] [1,] 0.0 1.00 NA [2,] 0.5 1.25 0.75 [3,] 0.5 NA NA For each numeric value, I want to replace them with their corresponding y-value. The result should look like (here, each row represents a variable rather than the columns):

Dear mailing list, I have following array: X2 Y2 [1,] 422.7900 6.0 [2,] 469.8007 10.5 [3,] 483.9428 11.0 [4,] 532.4917 25.5 [5,] 596.1942 33.5 [6,] 630.8496 40.5 [7,] 733.2996 45.0 [8,] 946.4779 32.0 [9,] 996.8068 35.5 [10,] 1074.3310 23.0 I do afterwards the following: plot.new() plot.window(xlim=c(min(X1)-50,max(X1)+50),

Hallo, I am running R-2.6. on Windows. I have a code which uses library(convert). Can anyone tell me which package I need to install to run this code. Everytime I receive the error message library (convert) not found. Thanks, Corinna

Hello, I'm new to R and I'd like to dynamically assign names to the entries of a list. The situation is: I load several ascii-files from a folder. The data shall be stored within the list structure, where the file names are assigned to the list entries. > flist $file1.txt [1] 1.0 1.2 1.4 1.6 1.8 2.0... $file2.txt [1] 1.0 1.2 1.4 1.6 1.8 2.0... That's what I would