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....1,power=0 .80,alpha=0.05,dominant met p=0.25")} I would appreciate the help, Marco MPM Boks, MD PhD, Department of Psychiatry, B01.206 University Medical Centre Utrecht, PO box 85500, 3508 GA Utrecht The Netherlands. Tel: +31 30 2506370 Fax: +31 30 2505509 Email: m.p.m.boks@umcutrecht.nl <mailto:m.p.m.boks@umcutrecht.nl> [[alternative HTML version deleted]]

...s only output of the last variable for (i in 1:length(data)) { glm.data[[i]] <- glm (outcome~data[[i]]*phenotype, data=data)) } summary (glm.data[[i]]) # gives only output of the last variable Or should I use tapply or something like that? In what way? Thanks! Afke Terwisscha email: aterwiss@umcutrecht.nl <mailto:aterwiss@umcutrecht.nl> ------------------------------------------------------------------------------ De informatie opgenomen in dit bericht kan vertrouwelijk zijn en is uitsluitend bestemd voor de geadresseerde. Indien u dit bericht onterecht ontvangt, wordt u verzocht de i...

Dear R-experts, I have got a dataframe: data ID disease V1 V2 1 p1 1 2 p1 3 3 p3 3 4 p3 5 5 p5 1 From which I extract a usefull table: affect affect 1 3 5 p1 1 1 0 p3 0 1 1 p5 1 0 0 I want to merge this with anotherdataframe: age p1 23 p2 24 p3 23 p4 11 p5 45 If have tried as.data.frame(affect) and other solutions to get the following comment going:

...ard errors that account for the correlation of individuals within similar units whereas the SPSS procedure will not. The lmer standard errors better capture the true sampling variance of the parameters and SPSS doesn't. > -----Original Message----- > From: Draga, R. [mailto:R.Draga at umcutrecht.nl] > Sent: Friday, August 01, 2008 11:45 AM > To: Doran, Harold > Subject: RE: [R] Major difference in the outcome between SPSS > and R statisticalprograms > > Thanks for the reaction > > I know, I would not expect the outcomes to be the same. > But, I have never bef...

Dear experts, For the makeGenotype function I need a list as in the example. However, since my list needs to be 184 long there must be an easy way to make it. >list(1:2,3:4,5:6,7:8) [[1]] [1] 1 2 [[2]] [1] 3 4 [[3]] [1] 5 6 [[4]] [1] 7 8 I have tried lis<-1:184 dim(lis)=c(92,2,1) as.list(lis) and several other options. Any suggestions? many thanks Marco [[alternative

...lcome. Thanks. Erik Koffijberg. ===================================================== Julius Center for Health Sciences and Primary Care University Medical Center Utrecht Str. 6.131 P.O.Box 85500, 3508 GA Utrecht, The Netherlands Tel: +31 30 250 3013, Fax: +31 30 250 5480 E-mail: H.Koffijberg at umcutrecht.nl

I am trying to replace values of a vector (consisting of 15 values) by a value that is related to a matching value in a dataset (consisting of 17 rows). Here's an example The vector: v <- c(f,a,e,d,m,o,e,f,i,n,e,i,b,a,o) The dataset's columns consist of the following values d[,1] <- c(a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,p,q) d[,2] <- 1:17 So I want to end up with a vector that

Dear R users, This command works (calling a programm -called whap- with file specifiers etc.): >system('cmd /c "c:\\pheno\\whap --file c:\\pheno\\smri --alt 1 --perm 500"', intern=TRUE) Now I need to call it from a loop to replace the "1" by different number, however I get lost using the quotes: I tried numerous versions of: >i<-1

I was reading about the project drawer feature in Textmate, which is Mac only. Is there a similar feature in a Windows based text editor that works with R. This feature sounds really useful. Thanks, Graham [[alternative HTML version deleted]]

Dear R-experts, My problem is how to handle a 10GB data file containing genotype data. The file is in a particular format (Illumina final report) and needs to be altered and merged with phenotype data for further analysis. PERL seems to be an frequently used solution for this type of work, however I am inclined to think it should be doable with R. How do I open a text-file, line by line,

...f there is a version available that we could use? Iris Kolder ----- Original Message ---- From: "Liaw, Andy" <andy_liaw@merck.com> To: Martin Morgan <mtmorgan@fhcrc.org>; Iris Kolder <iriskolder@yahoo.com> Cc: r-help@stat.math.ethz.ch; N.C. Onland-moret <n.c.onland@umcutrecht.nl> Sent: Monday, December 18, 2006 7:48:23 PM Subject: RE: [R] Memory problem on a linux cluster using a large data set [Broadcast] In addition to my off-list reply to Iris (pointing her to an old post of mine that detailed the memory requirement of RF in R), she might consider the following:...

...p. Erik. ===================================================== Erik Koffijberg, MSc Julius Center for Health Sciences and Primary Care University Medical Center Utrecht Str. 6.131 P.O.Box 85500, 3508 GA Utrecht, The Netherlands Tel: +31 30 250 3013, Fax: +31 30 250 5480 E-mail: H.Koffijberg at umcutrecht.nl

...if there is a version available that we could use? Iris Kolder ----- Original Message ---- From: "Liaw, Andy" <andy_liaw@merck.com> To: Martin Morgan <mtmorgan@fhcrc.org>; Iris Kolder <iriskolder@yahoo.com> Cc: r-help@stat.math.ethz.ch; N.C. Onland-moret <n.c.onland@umcutrecht.nl> Sent: Monday, December 18, 2006 7:48:23 PM Subject: RE: [R] Memory problem on a linux cluster using a large data set [Broadcast] In addition to my off-list reply to Iris (pointing her to an old post of mine that detailed the memory requirement of RF in R), she might consider the following:...

...segments between points like the chart attached. Can you help me please? Thanks. ________________________________________________________________________ ____ .yahoo.fr ------------------------------ Message: 42 Date: Mon, 4 Aug 2008 09:56:02 +0200 From: "Draga, R." <R.Draga at umcutrecht.nl> Subject: [R] Major difference in multivariate analyses SPSS and R To: <r-help at r-project.org> Message-ID: <C222D04679FF794EA98B823041802F1CE27C20 at EXV4.ds.umcutrecht.nl> Content-Type: text/plain Dear colleagues, I know SPSS can not compute linear mixed models. I used ...

CRAN (and crantastic) updates this week New packages ------------ * disclapmix (0.1) Maintainer: Mikkel Meyer Andersen Author(s): Mikkel Meyer Andersen and Poul Svante Eriksen License: GPL-2 http://crantastic.org/packages/disclapmix disclapmix makes inference in a mixture of Discrete Laplace distributions using the EM algorithm. * EstSimPDMP (1.1) Maintainer: Unknown Author(s):

...(Germany) Centre of Excellence for Invasion Biology Faculty of Science Natural Sciences Building Private Bag X1 University of Stellenbosch Matieland 7602 South Africa ------------------------------ Message: 23 Date: Mon, 29 Sep 2008 16:05:29 +0200 From: "Gondrie, M." <M.Gondrie at umcutrecht.nl> Subject: [R] nomogram function (design library) To: <r-help at R-project.org> Message-ID: <72347512FFF6574380BE8AF537C66C91F872DF at EXV5.ds.umcutrecht.nl> Content-Type: text/plain; charset="us-ascii" Dear colleagues, I hope someone can help me with my problem. I h...

Hi, this has nothing to do with CentOS but with your router which does not support using the public IP from inside your network (which is quite common). If the port is open on your router when you access it from another public IP then all is well. Regards, Michel On Fri, 2018-09-14 at 09:43 +0200, Marcin Trendota wrote: > W dniu 13.09.2018 o 22:19, Oleg Cherkasov pisze: > > On 13.

Dear colleagues, I know SPSS can not compute linear mixed models. I used 'R' before for computing multivariate analyses. But, I never encountered such a major difference in outcome between SPSS and 'R': In SPSS the Pearson correlation between variable 1 and variable 2 is 31% p<0.001. In SPSS binary logistic regression gives us an Odds Ratio (OR)=4.9 (95% CI 2.7-9.0),

Dear colleagues, I hope someone can help me with my problem. I have fitted a cox model with the following syntax: # cox01def <-cph(Surv(TEVENT,EVENT) ~ ifelse(AGE>50, (AGE-50)^2,0) + BMI + # HDL+DIABETES +HISTCAR2 + log(CREAT)+ as.factor(ALBUMIN)+STENOSIS+IMT,data # = XC, x=T, y=T, surv=T) *1 Furthermore I have estimated my beta's also with a Lasso method - Coxpath ( from

On Fri, Mar 17, 2006 at 07:16:19PM +0300, ????? ??????? wrote: >/ multiplexing overflow 101:7104843 [receiver] / This indicates that the protocol got corrupted somehow because that is saying that the receiver got a MSG_DELETED message with a 7104843-byte buffer attached (which rsync is telling you is too big), but you're not even deleting files. What version of rsync are you using? == ==