search for: uclink

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2005 Jul 30
2
Premature termination of script
...e selected file does not seem to be of the right type\n") #Should be able to exit the script here } cat("File look good keep going\n") How do I prevent R from interpreting the rest of the script if the user don't input the right file? Marco Blanchette, Ph.D. mblanche at uclink.berkeley.edu Donald C. Rio's lab Department of Molecular and Cell Biology 16 Barker Hall University of California Berkeley, CA 94720-3204 Tel: (510) 642-1084 Cell: (510) 847-0996 Fax: (510) 642-6062
2005 Aug 03
2
regexpr and portability issue
...egant way to deal with regular expressions (read here: more easier, more like perl style). 2) I have a portability problem when I extract the base.dir Windoz is using '\' instead of '/' to separate directories. Any suggestions/comments Many Tx Marco Blanchette, Ph.D. mblanche at uclink.berkeley.edu Donald C. Rio's lab Department of Molecular and Cell Biology 16 Barker Hall University of California Berkeley, CA 94720-3204 Tel: (510) 642-1084 Cell: (510) 847-0996 Fax: (510) 642-6062
2002 Aug 06
0
Fwd: Re: Incorrect password error
Use 'security = user' in smb.conf --- Michael Chan <mikeyboy@uclink.berkeley.edu> wrote: > Hi, sorry if this is a common problem that I just > couldn't find in the > documentation, but I've been trying to be able to > access my shares on a > Mandrake box from a Win2k client. There is a user > on the Mandrake > server named &...
2005 Aug 13
1
Broken tkrplot on Mac OS X
...[tcl] couldn't find procedure Rplot_Init. Error in library(tkrplot) : .First.lib failed for 'tkrplot' Any clue as how to fix tkrplot? Why is this package so difficult to install??? Anyway, I would appreciate any help/suggestions. Many tx Marco Marco Blanchette, Ph.D. mblanche at uclink.berkeley.edu Donald C. Rio's lab Department of Molecular and Cell Biology 16 Barker Hall University of California Berkeley, CA 94720-3204 Tel: (510) 642-1084 Cell: (510) 847-0996 Fax: (510) 642-6062
2003 Aug 15
1
The snow package
I have a few questions regarding the snow package: 1) Is fine-grained parallelism even possible with R/snow? (ie, one task that spawns sub-tasks to do work, with results sent back to the parent task). The example(s) only seem to be totally-independent processing (which can be done just as easily with shell-script wrappers....) 2) If so, is an example available? 3. If not, then it is still
2006 Jul 25
1
Drosophila Genome 2.0 annaffy annotation
...it is specified that the constructor will try to load the annotation. Question: 1)Am I using the right annotation file ie ³drosophila2² 2) Do I need to install it before trying to use it. 3) If so, what is the procedure Many thanks ______________________________ Marco Blanchette, Ph.D. mblanche@uclink.berkeley.edu Donald C. Rio''s lab Department of Molecular and Cell Biology 16 Barker Hall University of California Berkeley, CA 94720-3204 Tel: (510) 642-1084 Cell: (510) 847-0996 Fax: (510) 642-6062 -- [[alternative HTML version deleted]]
2002 Aug 06
0
Incorrect password error
...th valid users = mike, and it still didn't work. Public shares do work, however. A few values I thought might be needed: security = share username map = /etc/smbusers [homes] comment = Home Directories browseable = no writable = yes Thanks for any help. - mike mikeyboy@uclink.berkeley.edu -------------- next part -------------- HTML attachment scrubbed and removed
2004 Jun 25
2
Simulating from a Multivariate Normal Distribution Using a Correlation Matrix
Hello, I would like to simulate randomly from a multivariate normal distribution using a correlation matrix, rho. I do not have sigma. I have searched the help archive and the R documentation as well as doing a standard google search. What I have seen is that one can either use rmvnorm in the package: mvtnorm or mvrnorm in the package: MASS. I believe I read somewhere that the latter was
2003 Oct 02
3
indexing a vector
Dear All: I'd like to know how to sort and then index a vector of floats by several levels in R. For example >x<-rnorm(100) > MyLevels<-quantile(x,probs=c(0,.5,1)) > MyLevels 0% 50% 100% -2.11978442 -0.03770613 2.00186397 next i want to replace each x[i] in x by 1,2,3 or 4 depending on which quantile that x[i] falls. How do I do that in a
2003 Oct 28
1
strptime command in R
Hello all: I have a column of times in format x "16:30:00" "16:30:03" "16:59:00" etc which I need to convert into time variables and do some operations on. I do the command y<-strptime(x,"%H:%M:%S"). This executes almost istantly (for a column x of length 1000 in Windows, but in Unix, where I run my production jobs, this takes over 4 minutes. I
2004 Sep 13
2
bagplot()
Hello, I saw a little discussion about this in the archives, but it was unclear to me whether someone had submitted a port to R of the Splus bagplot() function. If so, does anyone know where I could get it? Thanks. Best, Matt
2005 Apr 29
2
udev om Opteron
Hello, We have a few systems where udevd seems to failing silently on Opteron based Centos 4 boxes. Has anyone else seen this? -geoff
2004 Oct 12
1
Sun Gridengine and Centos
G'day. I'm having a little trouble getting Gridengine 5.3 running properly on a cluster using Centos 3.3. Everything appears okay, but my jobs hang in the queue with the gridengine complaining that node is overloaded, but there is nothing (unusual) running on the node and the load is 0. Has anyone else run into similar problems? -geoff
2003 Oct 28
2
R performance on Unix
Hi I'm observing a huge difference in the performance speed of R on Windows and Unix, even though I know that my Unix machine is much more powerful than my Win machine. In particular, any character processing task is very time consuming on Unix. strptime(x,"%H:%M:%S") is about 10 times slower on Unix for vector x of the length of ~ 500. read.table() also is very slow. is there
2002 May 15
0
Reading multi-line FWF data
I keep getting these fixed-width format (FWF) data files where variables for a single subject are spread across multiple lines and each line has a different format (apparently created with SAS or SPSS). To read them I stole some stuff from `read.fwf' in base R and threw together the function included below. Please feel free to test this function with your own data and let me know of any
2005 May 05
2
problem with plot() and R 2.1.0
The following line when pasted into an R Console window causes Windows XP to flash a blue screen and then restart. R version 2.1.0 >plot(x=c(1:100000),y=sin(c(1:100000)), type="l") Windows XP SP2 I installed the precompiled version of R 2.1.0 This isn't the data I was originally trying to graph, but a way to reproduce the error I observed. Plotting without the sin() did not