search for: tura

I want to run a R program, prog.R, interactively. My question is, is there a way I can start prog.R on the shell terminal when invoking R, instead of using source() inside R? TIA, Gang

Hello, I'm an MD working in an eye clinic. I'm learning by myself to use R for use in my research works and for implementation in a software project. There are some authors who recomends the use of Cox regression as a substitute for Logistic regression (<a href="http://www.biomedcentral.com/1471-2288/3/21.pdf"> Barros AJD, Hirakata VN. BMCMedical Research Methodology, 2003;

...ing likelihood ratio like of Wald test. But in my case I need use a non-parametric test (Mann-Whitney). I was use: RSiteSearch("sequential rank test") but not solve my problem. Do you know routine or package implement sequential rank test in R? Thanks in advance -- Bernardo Rangel Tura, M.D,Ph.D National Institute of Cardiology Brazil

...ed create a common plot but with the number of subjects in risk each ticks times for two different groups in bottom of plot (I put one example in attach). Do you know a routine for this? Is possible create a routine for this? In this case with how commands? Thanks in advance! -- Bernardo Rangel Tura, M.D,MPH,Ph.D National Institute of Cardiology Brazil

Hi All, I am using DNAcopy package in R for copy number analysis of 500K chip. The final output which I get from DNA copy is too big to be printed in a file. So I am getting an error as "reached getOption("max.print") -- omitted 475569 rows " Can somebody please provide me the pointers with how to increase the limit for max.print . Thanks, Pooja DISCLAIMER\

Dear Helpers   I have a sample frame and i have sampled from it using three methods and now i want to calculate the statistics but i only get the population parameters.   H <- matrix(rnorm(100, mean=50000, sd=5000)) sampleframe=data.frame(type=c(rep("H",100)),value=c(H)) sampleframe   str=strata(sampleframe,c("type"),size=c(20,), method="srswor")

...;-1980:2002 rf<-exp(91.37162-0.04720281*ano) ciw.f<-sqrt(1.766073e-08) plotCI(ano,rf,uiw=ciw.f) But in the graph not shown the errors bar and I have this error msg zero-length arrow is of indeterminate angle and so skipped Well, where is my eror? Thanks in advance Bernardo Rangel Tura, MD, PhD National Institute of Cardiology Laranjeiras Rio de Janeiro Brazil

Hi, I am wondering how to draw biplot with the same scales on both plots? For example, if the two plots have much different scales, generally the two x-y's are scaled so that the two plots are sitting in the center automatically. How to disable this? Thanks -- Weiwei Shi, Ph.D Research Scientist GeneGO, Inc. "Did you always know?" "No, I did not. But I believed..."

...| | | | | | | | | | | | | | | -------- -------- | | | --------------------------------------- How do I do for you create the wanted Layout? Thanks advanced for all Bernardo Rangel Tura, M.D., MSc -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-help-requ...

Dear All, I was looking for the color index in?image function,?such as from topo.colors(n) and etc. but still never found it. For instance, from the help menu. ########################################### # Volcano data visualized as matrix. Need to transpose and flip # matrix horizontally. image(t(volcano)[ncol(volcano):1,]) # A prettier display of the volcano x <- 10*(1:nrow(volcano)) y

...5.8427,6.3214,6.7349,7.3651) x<-c(37,42,47,52,57,62,67,72,77,82) I need fit R and A in y=f(x)=R*exp(A*x), with minimize sd= sqrt(SRR/(n-2)) where SRR is Sum of the Square of the Residuals and n is number of data points (in this case 10) How do I make this? Thanks in advance Bernardo Rangel Tura, MD, MSc National Institute of Cardiology Laranjeiras Rio de Janeiro Brazil

Hi, R users: I want to fit my data into a normal distribution by using the command "fitdistr" in "MASS". I changed my data class from "ts" to "numeric" by >class(mydata)="numeric" but after using "fitdistr", I got the result below >fitdistr(mydata,"normal") mean sd NA NA (NA) (NA) the help doc of

...ful adjust a system of logistic equations to tread the 3 equations and in same time to obtain estimatives of effects and uncorrelated error terms. The systemfit package fit linear system and non-linear system but is possible adjust a logistic system in R? Thanks in advance -- Bernardo Rangel Tura, M.D,MPH,Ph.D National Institute of Cardiology Brazil

...p(A*age),start=list(R=.1,A=.1)) Error mensage: Error in nls(X2000 ~ R * exp(A * age), start = list(R = 0.1, A = 0.1)) : singular gradient In addition: Warning message: no finite arguments to min; returning Inf How I fix this problem? Other command? Thanks in advance Bernardo Rangel Tura, MD, MSc National Institute of Cardiology Laranjeiras Rio de Janeiro Brazil

...981 1 5 8 3 7 9 5 9 15 7 11 20 future data base year age x 1980 1 5 1980 3 7 1980 5 9 1980 7 11 1981 1 8 1981 3 9 1981 5 15 1981 7 20 Thanks in advance Bernardo Rangel Tura, MD, MSc National Institute of Cardiology Laranjeiras Rio de Janeiro Brazil -- No virus found in this outgoing message. Checked by AVG Anti-Virus.

...1) If the time serie was Non seasonal ar(1) with one seasonal ma(1) is simple using command arima for fit a time serie, but I don't know HOW TO fit a arima model in a time serie with 2 diferent seasonal periods I attach de file ts.csv with the serie. Thanks in advance.... Bernardo Rangel Tura, M.D, M.P.H, PhD National Institute of Cardiology Rio de Janeiro - Brazil

Hi, I'm trying to fit a model which has a response bias, but also a day to day bias. If I try to simulate the data, I don't get the right values with optim, and also I can't use the function to give a prediction interval. My simulated data are: DF <- as.data.frame(cbind(x=rep(1:10,2),dag=rep(1:2,each=10))) bias <- c(-0.2,0.5) DF$y <- ((DF$x-0.1) * 5)+2 +

I have the clinical study data. Year 0 Year 3 Retinol (nmol/L) N Mean +-sd Mean +-sd Vitamin A group 73 1.89+-0.36 2.06+-0.53 Trace group 57 1.83+-0.31 1.78+-0.30 where N is the number of male for the clinical study. I want to test if the mean serum retinol has increased over 3 years among subjects in the vitamin A group. > 1.89+0.36

In the ouput below, what is the "S" statistic (S = 96) that is used for Spearman? I don't have easy access to the books cited on the help page. Other texts and web sources that I have found use t or z as a test for Spearman, perhaps inappropriately. Can anyone tell me how S is computed or refer to a web resource? I see from the code for that: q <- as.integer((n^3 - n) * (1

...74 11.744 26.631 61.573 49.738 80.615 0.311 NA Now I need fit a loglinear model with this variables, but I need know have a command with generate ALL models with the set this 8 vairables (ALL minus [,8]) incluindind the interactions. Can Anyone Help me? Thanks in advance Bernardo Rangel Tura, MD, MSc National Institute of Cardiology Laranjeiras Rio de Janeiro Brazil -- No virus found in this outgoing message. Checked by AVG Anti-Virus.