Displaying 20 results from an estimated 65 matches for "trycatchon".
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trycatchone
2012 May 15
1
KEGGSOAP installation error
...haracter(encoding), as.logical(useDotNames), xinclude, error,
addFinalizer, PACKAGE = "XML")
2: xmlParse(url)
3: parseSchemaDoc(fileName)
4: processWSDL("http://soap.genome.jp/KEGG.wsdl")
5: fun(libname, pkgname)
6: doTryCatch(return(expr), name, parentenv, handler)
7: tryCatchOne(expr, names, parentenv, handlers[[1L]])
8: tryCatchList(expr, classes, parentenv, handlers)
9: tryCatch(fun(libname, pkgname), error = identity)
10: runHook(".onLoad", env, package.lib, package)
11: loadNamespace(package, c(which.lib.loc, lib.loc))
12: doTryCatch(return(expr), name, pa...
2018 Jul 05
2
Segfault on ubuntu 18.04
...ha", build_vignettes = TRUE)
*** caught segfault ***
address 0x68456, cause 'memory not mapped'
Traceback:
1: dyn.load(file, DLLpath = DLLpath, ...)
2: library.dynam(lib, package, package.lib)
3: loadNamespace(name)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch(loadNamespace(name), error = function(e) stop(e))
8: getNamespace(ns)
9: asNamespace(ns)
10: getExportedValue(pkg, name)
11: curl::new_handle
12: handle(name)
13: handle_find(url)
14: ha...
2013 Jun 07
1
cannot load pbdMPI package after compilation
...gt;&1 <
/tmp/RtmpGkncGK/file1e541c57190
ERROR: loading failed
*** caught segfault ***
address (nil), cause 'unknown'
Traceback:
1: .Call("spmd_initialize", PACKAGE = "pbdMPI")
2: fun(libname, pkgname)
3: doTryCatch(return(expr), name, parentenv, handler)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
5: tryCatchList(expr, classes, parentenv, handlers)
6: tryCatch(fun(libname, pkgname), error = identity)
7: runHook(".onLoad", env, package.lib, package)
8: loadNamespace(package, c(which.lib.loc, lib.loc))
9: doTryCatch(return(expr), name, pa...
2007 Aug 23
2
read big text file into R
...0.0 0.08 0.1
"gsub" 0.00 0.0 0.08 0.1
"try" 0.00 0.0 0.08 0.1
"tryCatch" 0.00 0.0 0.08 0.1
"tryCatchList" 0.00 0.0 0.08 0.1
"tryCatchOne" 0.00 0.0 0.08 0.1
"capture.output" 0.00 0.0 0.06 0.0
"deparse" 0.00 0.0 0.02 0.0
"eval.with.vis" 0.00 0.0 0.02 0.0
"evalVis" 0.00 0.0...
2009 Jan 07
1
Compiling R for Solaris 10 Intel
...Have other people experienced this at all?
Tia!
-y
> library(foreign)
*** caught segfault ***
address fe899a60, cause 'invalid permissions'
Traceback:
1: .C("spss_init", PACKAGE = "foreign")
2: fun(...)
3: doTryCatch(return(expr), name, parentenv, handler)
4: tryCatchOne(expr, names, parentenv, handlers[[1]])
5: tryCatchList(expr, classes, parentenv, handlers)
6: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1]], quote(doTryCatch))) call <- sys.call(-4) dcall <- de...
2007 Dec 10
1
Building R on Sun Solaris 10 (SPARC) using Sun Studio 12
...t;:
> > library(foreign)
>
> *** caught segfault ***
> address fbb1dc40, cause 'invalid permissions'
>
> Traceback:
> 1: .C("spss_init", PACKAGE = "foreign")
> 2: fun(...)
> 3: doTryCatch(return(expr), name, parentenv, handler)
> 4: tryCatchOne(expr, names, parentenv, handlers[[1]])
> 5: tryCatchList(expr, classes, parentenv, handlers)
> 6: tryCatch(expr, error = function(e) { call <-
> conditionCall(e) if (!is.null(call)) { if
> (identical(call[[1]], quote(doTryCatch))) call <-
> sys.ca...
2018 Sep 19
5
segfault issue with parallel::mclapply and download.file() on Mac OS X
...ess 0x11575ba3a, cause 'memory not mapped'
*** caught segfault ***
address 0x11575ba3a, cause 'memory not mapped'
Traceback:
1: download.file(paste0(url_base, s), s)
2: FUN(X[[i]], ...)
3: lapply(X = S, FUN = FUN, ...)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch(expr, error = function(e) { call <- conditionCall(e) if
(!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch)))
call <- sys.call(-4L) dcall <- dep...
2018 Jul 05
0
Segfault on ubuntu 18.04
...s 0x68456, cause 'memory not mapped'
>>
>> Traceback:
>> 1: dyn.load(file, DLLpath = DLLpath, ...)
>> 2: library.dynam(lib, package, package.lib)
>> 3: loadNamespace(name)
>> 4: doTryCatch(return(expr), name, parentenv, handler)
>> 5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
>> 6: tryCatchList(expr, classes, parentenv, handlers)
>> 7: tryCatch(loadNamespace(name), error = function(e) stop(e))
>> 8: getNamespace(ns)
>> 9: asNamespace(ns)
>> 10: getExportedValue(pkg, name)
>> 11: cur...
2018 Jul 06
0
Segfault on ubuntu 18.04
...; *** caught segfault ***
> address 0x68456, cause 'memory not mapped'
>
> Traceback:
> 1: dyn.load(file, DLLpath = DLLpath, ...)
> 2: library.dynam(lib, package, package.lib)
> 3: loadNamespace(name)
> 4: doTryCatch(return(expr), name, parentenv, handler)
> 5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
> 6: tryCatchList(expr, classes, parentenv, handlers)
> 7: tryCatch(loadNamespace(name), error = function(e) stop(e))
> 8: getNamespace(ns)
> 9: asNamespace(ns)
> 10: getExportedValue(pkg, name)
> 11: curl::new_handle
> 12: handle(na...
2008 Sep 05
1
Problem installing Biobase on Solaris
...nable to load shared library
'/usr/local/lib/R/library/Biobase/libs/Biobase.so':
ld.so.1: R: fatal: relocation error: file
/usr/local/lib/R/library/Biobase/libs/Biobase.so: symbol
__builtin_isnan: referenced symbol not found
Calls: <Anonymous> ... tryCatch -> tryCatchList -> tryCatchOne ->
<Anonymous>
Execution halted
ERROR: installing package indices failed
The machine I am using is a Sun SPARC Victoria Falls SunOS 5.10
Generic_127111-11 sun4v sparc SUNW,T5140
I posted this message to the BioC list and it was suggested that I tried
installing any R package that nee...
2012 Feb 23
1
segfault when using data.table package in conjunction with foreach
..., sep =
""), num, nr)
5: system.time({ computeAllPairSums(paste(GERMLINE,
"bc.chr22.q.20.file", sep = ""), num, nr)})
6: eval(expr, envir, enclos)
7: eval(c.expr, envir = args, enclos = envir)
8: doTryCatch(return(expr), name, parentenv, handler)
9: tryCatchOne(expr, names, parentenv, handlers[[1L]])
10: tryCatchList(expr, classes, parentenv, handlers)
11: tryCatch(eval(c.expr, envir = args, enclos = envir), error = function(e) e)
12: FUN(X[[1L]], ...)
13: lapply(S, FUN, ...)
14: doTryCatch(return(expr), name, parentenv, handler)
15: tryCatchOne(expr, na...
2010 Jun 15
1
building 2.11.1 on solaris 10
...oad shared library
'/usr/stat/work/dwc/R/R-2.11.1/library/stats/libs/stats.so':
ld.so.1: R: fatal: relocation error: file
/usr/stat/work/dwc/R/R-2.11.1/library/stats/libs/stats.so: symbol
__i_abs: referenced symbol not found
Calls: <Anonymous> ... tryCatch -> tryCatchList -> tryCatchOne ->
<Anonymous>
Execution halted
*** Error code 1
The following command caused the error:
echo "tools:::data2LazyLoadDB(\"datasets\", compress=3)" | \
R_DEFAULT_PACKAGES=NULL LC_ALL=C ../../../bin/R --vanilla --slave >
/dev/null
make: Fatal error: Command fai...
2011 Jan 04
0
R CMD check bug or misfeature
....
* checking for unstated dependencies in tests ... NOTE
Error in as.character(function (description = "", open = "", blocking = TRUE, :
cannot coerce type 'closure' to vector of type 'character'
Calls: <Anonymous> ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
The error is apparently due to several of the test scripts using scan()
which reads stuff from the script itself until an empty line is reached.
This works fine (as one can see below, all the tests pass), but
tools:::.check_packages_used_in_tests
wa...
2019 Nov 11
2
R en Jupyter Lab, error al cargar dplyr: "namespace 'rlang' 0.3.4 is being loaded, but >= 0.4.0 is required"
...r namespace load failed for %s%s:\n %s",
. sQuote(package), P, conditionMessage(e))
. if (logical.return)
. message(paste("Error:", msg), domain = NA)
. else stop(msg, call. = FALSE, domain = NA)
. })
3. tryCatchList(expr, classes, parentenv, handlers)
4. tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. value[[3L]](cond)
6. stop(msg, call. = FALSE, domain = NA)
Estoy utilizando Miniconda, con Jupyter Lab 1.14 y solamente tengo
instalados dos kernels:
(base) C:\Users\OB186007>jupyter kernelspec list
Available kernels:
ir C:\ProgramData\Mini...
2010 Feb 11
2
LinkingTo and C++
..., but then I get :
$ Rscript -e "B::g()"
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared library '/usr/local/lib/R/library/B/libs/B.so':
/usr/local/lib/R/library/B/libs/B.so: undefined symbol: _ZN1AD1Ev
Calls: :: ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
If I then add a Makevars in B with this :
# find the root directory where A is installed
ADIR=$(shell $(R_HOME)/bin/Rscript -e "cat(system.file(package='A'))" )
PKG_LIBS= $(ADIR)/libs/A$(DYLIB_EXT)
Then it works:
$ Rscript -e "B::g()"
[1]...
2011 Jan 27
0
Problems installing gputools
...ught segfault ***
address 0x8, cause 'memory not mapped'
Traceback:
1: dyn.load(file, DLLpath = DLLpath, ...)
2: library.dynam(lib, package, package.lib)
3: loadNamespace(package, c(which.lib.loc, lib.loc), keep.source =
keep.source)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch(expr, error = function(e) { call <- conditionCall(e) if
(!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <-
sys.call(-4L) dcall <- deparse(call)[1L] prefix <- pa...
2010 Feb 08
2
Error on start R in server
...getClassFromCache(Class, where)
2: getClassDef(cl)
3: methods:::is(genfun, "genericFunction")
4: registerS3methods(nsInfo$S3methods, package, env)
5: loadNamespace(package, c(which.lib.loc, lib.loc), keep.source =
keep.source)
6: doTryCatch(return(expr), name, parentenv, handler)
7: tryCatchOne(expr, names, parentenv, handlers[[1L]])
8: tryCatchList(expr, classes, parentenv, handlers)
9: tryCatch(expr, error = function(e) { call <- conditionCall(e) if
(!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch)))
call <- sys.call(-4L) dcall <-...
2008 Mar 12
1
gracefully handing a library load error
..."library(cairoDevice)" causes:
*** caught segfault ***
address 0x8, cause 'memory not mapped'
Traceback:
1: .C("R_gtk_setEventHandler", PACKAGE = "cairoDevice")
2: firstlib(which.lib.loc, package)
3: doTryCatch(return(expr), name, parentenv, handler)
4: tryCatchOne(expr, names, parentenv, handlers[[1]])
5: tryCatchList(expr, classes, parentenv, handlers)
6: tryCatch(expr, error = function(e) { call <- conditionCall(e) if
(!is.null(call)) { if (identical(call[[1]],
quote(doTryCatch))) call <- sys.call(-4) dcall <-
de...
2012 Feb 06
1
Segfault on ".C" registration via R_CMethodDef according to 'Writing R Extensions'.
...*** caught bus error ***
address 0xe, cause 'non-existent physical address'
Traceback:
1: dyn.load(file, DLLpath = DLLpath, ...)
2: library.dynam(lib, package, package.lib)
3: loadNamespace(package, c(which.lib.loc, lib.loc))
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <-...
2010 Jan 05
1
Naming functions for the purpose of profiling
...ction. Of course, this can
in fact be any of several functions, but I am unable to see how I could
use the information from Rprof.out to discern which function is taking
the most time. An example line from my Rprof.out is:
rbernoulli <Anonymous> runOneRound FUN lapply sfLapply doTryCatch
tryCatchOne tryCatchList tryCatch try eval.with.vis eval.with.vis source
In my case, the <Anonymous> functions seem to be any of several
work-horse functions, that are part of a list, and different cases are
dispatched to different functions. I could of course get them all out of
the list and rewrit...