Displaying 20 results from an estimated 67 matches for "trycatchlist".
2012 May 15
1
KEGGSOAP installation error
...error,
addFinalizer, PACKAGE = "XML")
2: xmlParse(url)
3: parseSchemaDoc(fileName)
4: processWSDL("http://soap.genome.jp/KEGG.wsdl")
5: fun(libname, pkgname)
6: doTryCatch(return(expr), name, parentenv, handler)
7: tryCatchOne(expr, names, parentenv, handlers[[1L]])
8: tryCatchList(expr, classes, parentenv, handlers)
9: tryCatch(fun(libname, pkgname), error = identity)
10: runHook(".onLoad", env, package.lib, package)
11: loadNamespace(package, c(which.lib.loc, lib.loc))
12: doTryCatch(return(expr), name, parentenv, handler)
13: tryCatchOne(expr, names, parentenv,...
2018 Jul 05
2
Segfault on ubuntu 18.04
...***
address 0x68456, cause 'memory not mapped'
Traceback:
1: dyn.load(file, DLLpath = DLLpath, ...)
2: library.dynam(lib, package, package.lib)
3: loadNamespace(name)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch(loadNamespace(name), error = function(e) stop(e))
8: getNamespace(ns)
9: asNamespace(ns)
10: getExportedValue(pkg, name)
11: curl::new_handle
12: handle(name)
13: handle_find(url)
14: handle_url(handle, url, ...)
15: httr::GET(url, path = path,...
2013 Jun 07
1
cannot load pbdMPI package after compilation
...ading failed
*** caught segfault ***
address (nil), cause 'unknown'
Traceback:
1: .Call("spmd_initialize", PACKAGE = "pbdMPI")
2: fun(libname, pkgname)
3: doTryCatch(return(expr), name, parentenv, handler)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
5: tryCatchList(expr, classes, parentenv, handlers)
6: tryCatch(fun(libname, pkgname), error = identity)
7: runHook(".onLoad", env, package.lib, package)
8: loadNamespace(package, c(which.lib.loc, lib.loc))
9: doTryCatch(return(expr), name, parentenv, handler)
10: tryCatchOne(expr, names, parentenv,...
2007 Aug 23
2
read big text file into R
...0.0 154.28 99.9
"doTryCatch" 0.00 0.0 0.08 0.1
"gsub" 0.00 0.0 0.08 0.1
"try" 0.00 0.0 0.08 0.1
"tryCatch" 0.00 0.0 0.08 0.1
"tryCatchList" 0.00 0.0 0.08 0.1
"tryCatchOne" 0.00 0.0 0.08 0.1
"capture.output" 0.00 0.0 0.06 0.0
"deparse" 0.00 0.0 0.02 0.0
"eval.with.vis" 0.00 0.0...
2009 Jan 07
1
Compiling R for Solaris 10 Intel
...t; library(foreign)
*** caught segfault ***
address fe899a60, cause 'invalid permissions'
Traceback:
1: .C("spss_init", PACKAGE = "foreign")
2: fun(...)
3: doTryCatch(return(expr), name, parentenv, handler)
4: tryCatchOne(expr, names, parentenv, handlers[[1]])
5: tryCatchList(expr, classes, parentenv, handlers)
6: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1]], quote(doTryCatch))) call <- sys.call(-4) dcall <- deparse(call)[1] prefix <- paste("Error in&q...
2009 Jul 03
2
Error using the Rdonlp2 Package
...0, fn=L,par.u=par.u, par.l=par.l)
1 fx= 2.869234e+08 upsi= 0.0e+00 b2n= 5.0e+08 umi= 0.0e+00 nr 0
si-1
2 fx= -2.111002e+09 upsi= 0.0e+00 b2n= 5.1e+08 umi= 0.0e+00 nr 14
si-1
3 fx= -5.961701e+09 upsi= 0.0e+00 b2n= 4.1e+08 umi= 0.0e+00 nr 16
si-1
*Error Message:*
Error in tryCatchList(expr, classes, parentenv, handlers) :
SET_VECTOR_ELT() can only be applied to a 'list', not a 'character'
[[alternative HTML version deleted]]
2007 Dec 10
1
Building R on Sun Solaris 10 (SPARC) using Sun Studio 12
...lt ***
> address fbb1dc40, cause 'invalid permissions'
>
> Traceback:
> 1: .C("spss_init", PACKAGE = "foreign")
> 2: fun(...)
> 3: doTryCatch(return(expr), name, parentenv, handler)
> 4: tryCatchOne(expr, names, parentenv, handlers[[1]])
> 5: tryCatchList(expr, classes, parentenv, handlers)
> 6: tryCatch(expr, error = function(e) { call <-
> conditionCall(e) if (!is.null(call)) { if
> (identical(call[[1]], quote(doTryCatch))) call <-
> sys.call(-4) dcall <- deparse(call)[1] prefix <-...
2018 Sep 19
5
segfault issue with parallel::mclapply and download.file() on Mac OS X
...caught segfault ***
address 0x11575ba3a, cause 'memory not mapped'
Traceback:
1: download.file(paste0(url_base, s), s)
2: FUN(X[[i]], ...)
3: lapply(X = S, FUN = FUN, ...)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch(expr, error = function(e) { call <- conditionCall(e) if
(!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch)))
call <- sys.call(-4L) dcall <- deparse(call)[1L]
prefix <- paste("Error in", d...
2018 Jul 05
0
Segfault on ubuntu 18.04
...eback:
>> 1: dyn.load(file, DLLpath = DLLpath, ...)
>> 2: library.dynam(lib, package, package.lib)
>> 3: loadNamespace(name)
>> 4: doTryCatch(return(expr), name, parentenv, handler)
>> 5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
>> 6: tryCatchList(expr, classes, parentenv, handlers)
>> 7: tryCatch(loadNamespace(name), error = function(e) stop(e))
>> 8: getNamespace(ns)
>> 9: asNamespace(ns)
>> 10: getExportedValue(pkg, name)
>> 11: curl::new_handle
>> 12: handle(name)
>> 13: handle_find(url)...
2018 Jul 06
0
Segfault on ubuntu 18.04
...emory not mapped'
>
> Traceback:
> 1: dyn.load(file, DLLpath = DLLpath, ...)
> 2: library.dynam(lib, package, package.lib)
> 3: loadNamespace(name)
> 4: doTryCatch(return(expr), name, parentenv, handler)
> 5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
> 6: tryCatchList(expr, classes, parentenv, handlers)
> 7: tryCatch(loadNamespace(name), error = function(e) stop(e))
> 8: getNamespace(ns)
> 9: asNamespace(ns)
> 10: getExportedValue(pkg, name)
> 11: curl::new_handle
> 12: handle(name)
> 13: handle_find(url)
> 14: handle_url(handle, url,...
2008 May 08
1
problem with caretNWS on linux
...is nearly identical to the one occuring in
http://www.r-project.org/nosvn/R.check/r-release-macosx-ix86/caretNWS-00check.txt
Error in socketConnection(serverHost, port = port, open = "a+b", blocking =
TRUE) :
unable to open connection
Calls: system.time ... .local -> tryCatch -> tryCatchList ->
socketConnection
In addition: Warning message:
In socketConnection(serverHost, port = port, open = "a+b", blocking = TRUE)
:
penguin:8765 cannot be opened
The software versions I am using are the following:
Python 2.3.4
twistd (the Twisted daemon) 1.3.0rc1
nwsserver-1.5.2
R ver...
2008 Sep 05
1
Problem installing Biobase on Solaris
...DLLpath, ...) :
unable to load shared library
'/usr/local/lib/R/library/Biobase/libs/Biobase.so':
ld.so.1: R: fatal: relocation error: file
/usr/local/lib/R/library/Biobase/libs/Biobase.so: symbol
__builtin_isnan: referenced symbol not found
Calls: <Anonymous> ... tryCatch -> tryCatchList -> tryCatchOne ->
<Anonymous>
Execution halted
ERROR: installing package indices failed
The machine I am using is a Sun SPARC Victoria Falls SunOS 5.10
Generic_127111-11 sun4v sparc SUNW,T5140
I posted this message to the BioC list and it was suggested that I tried
installing any R...
2012 Feb 23
1
segfault when using data.table package in conjunction with foreach
...computeAllPairSums(paste(GERMLINE,
"bc.chr22.q.20.file", sep = ""), num, nr)})
6: eval(expr, envir, enclos)
7: eval(c.expr, envir = args, enclos = envir)
8: doTryCatch(return(expr), name, parentenv, handler)
9: tryCatchOne(expr, names, parentenv, handlers[[1L]])
10: tryCatchList(expr, classes, parentenv, handlers)
11: tryCatch(eval(c.expr, envir = args, enclos = envir), error = function(e) e)
12: FUN(X[[1L]], ...)
13: lapply(S, FUN, ...)
14: doTryCatch(return(expr), name, parentenv, handler)
15: tryCatchOne(expr, names, parentenv, handlers[[1L]])
16: tryCatchList(expr, cla...
2010 Jun 15
1
building 2.11.1 on solaris 10
...) :
unable to load shared library
'/usr/stat/work/dwc/R/R-2.11.1/library/stats/libs/stats.so':
ld.so.1: R: fatal: relocation error: file
/usr/stat/work/dwc/R/R-2.11.1/library/stats/libs/stats.so: symbol
__i_abs: referenced symbol not found
Calls: <Anonymous> ... tryCatch -> tryCatchList -> tryCatchOne ->
<Anonymous>
Execution halted
*** Error code 1
The following command caused the error:
echo "tools:::data2LazyLoadDB(\"datasets\", compress=3)" | \
R_DEFAULT_PACKAGES=NULL LC_ALL=C ../../../bin/R --vanilla --slave >
/dev/null
make: Fatal e...
2011 Jan 04
0
R CMD check bug or misfeature
...totally mysterious.
* checking for unstated dependencies in tests ... NOTE
Error in as.character(function (description = "", open = "", blocking = TRUE, :
cannot coerce type 'closure' to vector of type 'character'
Calls: <Anonymous> ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
Execution halted
The error is apparently due to several of the test scripts using scan()
which reads stuff from the script itself until an empty line is reached.
This works fine (as one can see below, all the tests pass), but
tools:::.check_packages_...
2019 Nov 11
2
R en Jupyter Lab, error al cargar dplyr: "namespace 'rlang' 0.3.4 is being loaded, but >= 0.4.0 is required"
...uot;"
. msg <- gettextf("package or namespace load failed for %s%s:\n %s",
. sQuote(package), P, conditionMessage(e))
. if (logical.return)
. message(paste("Error:", msg), domain = NA)
. else stop(msg, call. = FALSE, domain = NA)
. })
3. tryCatchList(expr, classes, parentenv, handlers)
4. tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. value[[3L]](cond)
6. stop(msg, call. = FALSE, domain = NA)
Estoy utilizando Miniconda, con Jupyter Lab 1.14 y solamente tengo
instalados dos kernels:
(base) C:\Users\OB186007>jupyter kernelspec list
A...
2010 Feb 11
2
LinkingTo and C++
...can compile A and B, but then I get :
$ Rscript -e "B::g()"
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared library '/usr/local/lib/R/library/B/libs/B.so':
/usr/local/lib/R/library/B/libs/B.so: undefined symbol: _ZN1AD1Ev
Calls: :: ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
If I then add a Makevars in B with this :
# find the root directory where A is installed
ADIR=$(shell $(R_HOME)/bin/Rscript -e "cat(system.file(package='A'))" )
PKG_LIBS= $(ADIR)/libs/A$(DYLIB_EXT)
Then it works:
$ Rscript -e "...
2011 Jan 27
0
Problems installing gputools
...pped'
Traceback:
1: dyn.load(file, DLLpath = DLLpath, ...)
2: library.dynam(lib, package, package.lib)
3: loadNamespace(package, c(which.lib.loc, lib.loc), keep.source =
keep.source)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch(expr, error = function(e) { call <- conditionCall(e) if
(!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <-
sys.call(-4L) dcall <- deparse(call)[1L] prefix <- paste("Error in",
dcall, ": ") LONG <...
2010 Feb 08
2
Error on start R in server
...methods:::is(genfun, "genericFunction")
4: registerS3methods(nsInfo$S3methods, package, env)
5: loadNamespace(package, c(which.lib.loc, lib.loc), keep.source =
keep.source)
6: doTryCatch(return(expr), name, parentenv, handler)
7: tryCatchOne(expr, names, parentenv, handlers[[1L]])
8: tryCatchList(expr, classes, parentenv, handlers)
9: tryCatch(expr, error = function(e) { call <- conditionCall(e) if
(!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch)))
call <- sys.call(-4L) dcall <- deparse(call)[1L] prefix <-
paste("Error i...
2008 Mar 12
1
gracefully handing a library load error
...segfault ***
address 0x8, cause 'memory not mapped'
Traceback:
1: .C("R_gtk_setEventHandler", PACKAGE = "cairoDevice")
2: firstlib(which.lib.loc, package)
3: doTryCatch(return(expr), name, parentenv, handler)
4: tryCatchOne(expr, names, parentenv, handlers[[1]])
5: tryCatchList(expr, classes, parentenv, handlers)
6: tryCatch(expr, error = function(e) { call <- conditionCall(e) if
(!is.null(call)) { if (identical(call[[1]],
quote(doTryCatch))) call <- sys.call(-4) dcall <-
deparse(call)[1] prefix <- paste("Error in&q...