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2012 Jun 18
0
Obtaining r-squared values from phylogenetic autoregression in ape
...1)n:1,(HBF:1,SWF:1)c:1)i:1,(PE:1,((P:1,C:1)w:1,(MF:1,HF:1)l:1)b:1)c:1)x:1)a:1,((((((CHB:1,AD:1)a:1,BA:1,SSB:1)i:1,(HB:1,SB:1)b:1)x:1,SC:1)x:1,((BRH:1,PH:1)e:1,(WLH:1,GH:1)b:1)d:1)x:1,DBF:1)a:1)a:1,((WW:1,(OT:1,SW:1)v:1)b:1,B:1)z:1)a:1,((DS:1,GS:1)j:1,(SSS:1,LS:1,(ES:1,SS:1)a:1)b:1)e:1)a;"
> treeX <- read.tree(text=x)
> treeX <- compute.brlen(treeX, method = "Grafen")
> data <- c(4.854185, 6.008532, 6.221286, 4.369945, 10.044475,
5.801292, 5.128374, 5.540995, 4.566704, 10.188250, 7.121077,
4.469329, 4.815972, 7.798617, 5.892205, 4.853027, 5.080509,
7.98...