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treefix
2011 Jun 19
1
Skyline plots from several trees in newick format
Dear all,
I am trying to create a consensus skyline plot using the "ape"
package(newbie).
I have a nexus file that looks like the one from above containing many
trees. (my_file.trees)
#NEXUS
begin trees; [Treefile generated by sim_coal.exe (Laurent Excoffier)]
tree true_tree_1 = [&U] (((13.1:6, 43.1:5):12, 28.1:14):284, (((((21.1:0,
(20.1:1, 4.1:0):0):1, ((37.1:0, (23.1:0, 29.1:0):0):0, 15.1:0):3):7,
(36.1:3, (40.1:0, 26.1:1):2):1):2, ((16.1:0, 33.1:0):3, (10.1:0,
18.1:0):2):8):46, ((((6.1:1, (11.1:0,...