search for: tree3

..."found" when a live tree is first observed, "alive" for when a tree is found alive and is not just found, and "mort" when it was previously alive but is now dead. Given the following: > tree_live = data.frame(tree = c("tree1","tree2","tree3","tree4","tree5"), live1 = c(0,0,0,1,1), live2 = c(0,0,1,1,0), live3 = c(0,1,1,0,0), live4 = c(1,1,0,0,0), live5 = c(1, 0, 0, 0, 0)) tree live1 live2 live3 live4 live5 1 tree1 0 0 0 1 1 2 tree2 0 0 1 1 0 3 tree3...

...ram ?? Thanks for any help library(ade4) library(cluster) library(stats) library(ape) data<-read.table(file="in.matrix",header=FALSE,sep="\t",row.names=1) dis<-dist.binary(data,method=5,diag=TRUE) clust<-hclust(dis) tree1<-as.phylo(clust) tree2<-as.phylo(clust) tree3<-as.phylo(clust) tree4<-as.phylo(clust) tree5<-as.phylo(clust) liste <-list(tree1,tree2,tree3,tree4,tree5) cons<-consensus(liste,p=0.5) cons_clust <-as.hclust(cons) Error in "[<-"(`*tmp*`, i, value = numeric(0)) : nothing to replace david

This is a call for comments, regarding what you do expect when copying multible source tree roots leading to the same directory root, using rsync. This problem may be discussed now, because in versions before rsync-2.5.6, the algorithm for removing the so called "duplicated files" was broken. That's why we expect nobody used it anyway in earlier versions - but who knows.. Example:

...------------- ---------------------- ------------------- ---------------------- -------------------- ----------- --------- tree1 PRAPACHE>=26.5 157 0.752 0.327 105 52 2.300 1.774 tree3 PRAPACHE>=26.5 & AGE>=51.74 120 0.897 0.31 78 42 2.894 1.924 aVirtualTwins can be found on [CRAN](https://cran.r-project.org/package=aVirtualTwins) and [github](https://github.com/prise6...

...------------- ---------------------- ------------------- ---------------------- -------------------- ----------- --------- tree1 PRAPACHE>=26.5 157 0.752 0.327 105 52 2.300 1.774 tree3 PRAPACHE>=26.5 & AGE>=51.74 120 0.897 0.31 78 42 2.894 1.924 aVirtualTwins can be found on [CRAN](https://cran.r-project.org/package=aVirtualTwins) and [github](https://github.com/prise6...