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...hat the cell reads "found" when a live tree is first observed, "alive" for when a tree is found alive and is not just found, and "mort" when it was previously alive but is now dead. Given the following: > tree_live = data.frame(tree = c("tree1","tree2","tree3","tree4","tree5"), live1 = c(0,0,0,1,1), live2 = c(0,0,1,1,0), live3 = c(0,1,1,0,0), live4 = c(1,1,0,0,0), live5 = c(1, 0, 0, 0, 0)) tree live1 live2 live3 live4 live5 1 tree1 0 0 0 1 1 2 tree2 0 0 1 1...

.... --- diff/diff.c | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/diff/diff.c b/diff/diff.c index 5851a1c9c..1f1ab6933 100644 --- a/diff/diff.c +++ b/diff/diff.c @@ -389,8 +389,10 @@ main (int argc, char *argv[]) errors++; } - free_tree (tree1); - free_tree (tree2); + if (tree1) + free_tree (tree1); + if (tree2) + free_tree (tree2); free_drives (drvs); free_drives (drvs2); -- 2.13.6

I have two identical disks /dev/sdb1 == source /dev/sdc1 == dest When I rsync the source -> dest rsync -a /tree2/ /tree2m the destination size id considerably larger. /dev/sdb1 17654736 6513064 10244848 39% /tree2 /dev/sdc1 17654736 7691192 9066720 46% /tree2m When I look down into the directories I find the following /tree2 ... SOURCE [root]# du -sk * 4 marina 8...

...function (AdGroupId) { print(memory.size()) channel <- odbcConnect("RDsn", uid = "xxxx", case = "tolower", pwd = "xxxxxx") Tree1 <- sqlQuery(channel, "exec SelectAdgroups 111120,0", as.is = c(FALSE, FALSE, FALSE, FALSE, TRUE)) Tree2 <- sqlQuery(channel, "exec SelectAdgroups 200337,0", as.is = c(FALSE, FALSE, FALSE, FALSE, TRUE)) gc() print(memory.size()) odbcClose(channel) rm(channel);rm(Tree1);rm(Tree2); gc() print(memory.size()) return(NULL) } I ran the function twice and I got the foll...

...ect and then into a dendogram ?? Thanks for any help library(ade4) library(cluster) library(stats) library(ape) data<-read.table(file="in.matrix",header=FALSE,sep="\t",row.names=1) dis<-dist.binary(data,method=5,diag=TRUE) clust<-hclust(dis) tree1<-as.phylo(clust) tree2<-as.phylo(clust) tree3<-as.phylo(clust) tree4<-as.phylo(clust) tree5<-as.phylo(clust) liste <-list(tree1,tree2,tree3,tree4,tree5) cons<-consensus(liste,p=0.5) cons_clust <-as.hclust(cons) Error in "[<-"(`*tmp*`, i, value = numeric(0)) : nothing to replace...

...' argument seems to be necessary in the gls case- if I don't, there is a further problem: 'Row names in dataframe do not match tree tip names. data taken to be in the same order as in tree. in: Initialize.corPhyl(X[[1]], ...)') This seems to go away if I remove the root taxon (A1): tree2<-drop.tip(tree, "A1") x2<-c(B1=47,D1=43,C1=45,B2=50,B3=47,B4=48) y2<-c(B1=2.9,D1=5.4,C1=2.8,B2=3.5,B3=3.2,B4=3.5) dat2<-as.data.frame(cbind(x2,y2)) model2<-gls(y2~x2,data=dat2, correlation=corBrownian(phy=tree2)) This raises various questions: 1) Was I misleading myself t...

This is a call for comments, regarding what you do expect when copying multible source tree roots leading to the same directory root, using rsync. This problem may be discussed now, because in versions before rsync-2.5.6, the algorithm for removing the so called "duplicated files" was broken. That's why we expect nobody used it anyway in earlier versions - but who knows.. Example:

Hi, In an effort to learn S4 objects, I am trying to port some c based tree code to S4 object. My immediate goal is to use .Call() interface for calling my c code from R. My long term goal is to understand how to write c structs that follows S4 classes and not the other-way-around. The c struct for the node is : typedef struct node{ int c; int n; inode **nodes; //length = n } inode; I

http://people.xiph.org/~oggk/christmas-tree2.ogv Now has a proper skeleton track, and doesn't mangle derf's words :) Oddly, a FLAC track with --best is larger than all the rest combined, so I've left it out for now.

Hi all, I am a phylogenetic student, I'm running SH test to examine free (tree1) and constrained (tree2) trees using R phangorn package. The outputs are like the following and i'm confused how should i interpret them!!!   Trees      ln L           Diff ln L    p-value [1,]     1 -1422.921   0.00000  0.4952 [2,]     2 -1457.282  34.36085  0.0201 Why it gives us two p values? Would you please help...

...This creates a file containing 11464 lines (the original 5059 files plus all the parent directories). Now we can run the normal rsync command: time rsync -RlHptgoD --numeric-ids -r -xz \ --include-from=/dev/stdin --exclude '*' --stats . \ remotehost:/extra_disk/tmp/tree2 < /tmp/includes Here were the reported statistics: Number of files: 11464 Number of files transferred: 5056 Total file size: 355520625 bytes Total transferred file size: 355520625 bytes Literal data: 355520625 bytes Matched data: 0 bytes...

...;long-options", 0, 0, 0 }, + { "key", 1, 0, 0 }, { "keys-from-stdin", 0, 0, 0 }, { "short-options", 0, 0, 0 }, { "time", 0, 0, 0 }, @@ -202,6 +204,7 @@ main (int argc, char *argv[]) int c; int option_index; struct tree *tree1, *tree2; + struct key_store *ks = NULL; g = guestfs_create (); if (g == NULL) @@ -272,6 +275,8 @@ main (int argc, char *argv[]) } else if (STREQ (long_options[option_index].name, "xattr") || STREQ (long_options[option_index].name, "xattrs")) {...

Hi, the following series adds a --key option in the majority of tools: this makes it possible to pass LUKS credentials programmatically, avoid the need to manually input them, or unsafely pass them via stdin. Thanks, Pino Toscano (2): mltools: create a cmdline_options struct Introduce a --key option in tools that accept keys builder/cmdline.ml | 2 +-

...;csv", 0, 0, 0 }, @@ -201,6 +204,8 @@ main (int argc, char *argv[]) struct drv *drvs2 = NULL; /* Second guest. */ const char *format = NULL; bool format_consumed = true; + int blocksize = 0; + bool blocksize_consumed = true; int c; int option_index; struct tree *tree1, *tree2; @@ -232,6 +237,8 @@ main (int argc, char *argv[]) echo_keys = 1; } else if (STREQ (long_options[option_index].name, "format")) { OPTION_format; + } else if (STREQ (long_options[option_index].name, "blocksize")) { + OPTION_blocksize; }...

...ions", 0, 0, 0 }, @@ -201,6 +204,8 @@ main (int argc, char *argv[]) struct drv *drvs2 = NULL; /* Second guest. */ const char *format = NULL; bool format_consumed = true; + int blocksize = 0; + bool blocksize_consumed = true; int c; int option_index; struct tree *tree1, *tree2; @@ -232,6 +237,8 @@ main (int argc, char *argv[]) echo_keys = 1; } else if (STREQ (long_options[option_index].name, "format")) { OPTION_format; + } else if (STREQ (long_options[option_index].name, "blocksize")) { + OPTION_blocksize; }...

From: Nikolay Ivanets <stenavin@gmail.com> This patch depends on changes in 'common' sub-module posted here: https://www.redhat.com/archives/libguestfs/2020-February/msg00150.html v3 fixes issue found during code review: - options now appear in alphabetical order v2: Almost the same as v1 except '--blocksize' option description is moved into a common submodule (similar to

From: Nikolay Ivanets <stenavin@gmail.com> This patch depends on changes in 'common' sub-module posted here: https://www.redhat.com/archives/libguestfs/2020-February/msg00099.html v2: Almost the same as v1 except '--blocksize' option description is moved into a common submodule (similar to key-option.pod). v1 was here:

...ions", 0, 0, 0 }, @@ -201,6 +204,8 @@ main (int argc, char *argv[]) struct drv *drvs2 = NULL; /* Second guest. */ const char *format = NULL; bool format_consumed = true; + int blocksize = 0; + bool blocksize_consumed = true; int c; int option_index; struct tree *tree1, *tree2; @@ -232,6 +237,8 @@ main (int argc, char *argv[]) echo_keys = 1; } else if (STREQ (long_options[option_index].name, "format")) { OPTION_format; + } else if (STREQ (long_options[option_index].name, "blocksize")) { + OPTION_blocksize; }...

From: Nikolay Ivanets <stenavin@gmail.com> This patch depends on changes in 'common' sub-module posted here: https://www.redhat.com/archives/libguestfs/2020-February/msg00096.html Nikolay Ivanets (1): tools: add '--blocksize' option for C-based tools align/scan.c | 8 ++++++++ align/virt-alignment-scan.pod | 12 ++++++++++++ cat/cat.c