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train0
2009 Dec 25
2
Help with SVM package Kernlab
..." and Cols V1 to V500 are "A/C/G/T" . There are 200 seq's for
training (100 + and - each). this is very similar to the "promotergene" data
set included as example with the package.
The model that I have generated is as follows:
modelforSVM <- ksvm(Class ~ ., data = train500, kernel = "rbfdot", kpar =
"automatic", C = 60, cross = 3, prob.model = TRUE)
The testSeq is a vector of 500 characters casted as a data.frame. I tried
adding the Class column as well later to the testSeq data frame but got the
same error.
I am using R with windows, 32 bit, ve...
2009 Dec 24
0
Error with Package "Kernlab" for SVM prediction
...ng file is a data frame with 501 columns: Col 1 is "Class" which
is "+" or "-" and Cols V1 to V500 are "A/C/G/T" . There are 200 seq's for
training (100 + and - each)
The model that I have generated is as follows:
modelforSVM <- ksvm(Class ~ ., data = train500, kernel = "rbfdot", kpar =
"automatic", C = 60, cross = 3, prob.model = TRUE)
The testSeq is a vector of 500 characters casted as a data.frame. I tried
adding the Class column as well later to the testSeq data frame but got the
same error.
I am using R with windows, 32 bit, ve...