search for: tr_srm_summary

...o check the package by running >> devtools::check(build_args="--no-build-vignettes") >> >> The following warning is shown: >> >> Warning: parse error in file >> >> 'C:/Users/wolski/AppData/Local/Temp/Rtmp4QanHv/SRMService.Rcheck/SRMService/doc/tr_srm_summary.R': >> >> /Users/wolski/AppData/Local/Temp/Rtmp4QanHv/SRMService.Rcheck/SRMService/doc/tr_srm_summary.R:2:22: >> unexpected '<' >> 1: params <- >> 2: list(configuration = < >> >> This is how the start of the .R file produced from the vi...

...aced into the inst/doc directory. However, when I did want to check the package by running devtools::check(build_args="--no-build-vignettes") The following warning is shown: Warning: parse error in file 'C:/Users/wolski/AppData/Local/Temp/Rtmp4QanHv/SRMService.Rcheck/SRMService/doc/tr_srm_summary.R': /Users/wolski/AppData/Local/Temp/Rtmp4QanHv/SRMService.Rcheck/SRMService/doc/tr_srm_summary.R:2:22: unexpected '<' 1: params <- 2: list(configuration = < This is how the start of the .R file produced from the vignette looks like. params <- list(configuration = <envi...

...of the > problem here? I have heard somewhere that R6 uses environments to > implemented some features. > > > > There is also a further problem I am encountering reproducible when > running devtools::install() or R CMD INSTALL > > ** installing vignettes > 'tr_srm_summary.Rmd' using 'UTF-8' > Warning in data(skylineconfig) : data set 'skylineconfig' not found > Error in get(data(skylineconfig)) : object 'skylineconfig' not found You likely need to specify the package name, e.g. data("skylineconfig", package = "yourp...

...R6 class which I pass to configuration the source of the problem here? I have heard somewhere that R6 uses environments to implemented some features. There is also a further problem I am encountering reproducible when running devtools::install() or R CMD INSTALL ** installing vignettes 'tr_srm_summary.Rmd' using 'UTF-8' Warning in data(skylineconfig) : data set 'skylineconfig' not found Error in get(data(skylineconfig)) : object 'skylineconfig' not found This problem isn't happening when running devtools::build_vignettes() The Package install works however if I...

...> However, when I did want to check the package by running > devtools::check(build_args="--no-build-vignettes") > > The following warning is shown: > > Warning: parse error in file > 'C:/Users/wolski/AppData/Local/Temp/Rtmp4QanHv/SRMService.Rcheck/SRMService/doc/tr_srm_summary.R': > /Users/wolski/AppData/Local/Temp/Rtmp4QanHv/SRMService.Rcheck/SRMService/doc/tr_srm_summary.R:2:22: > unexpected '<' > 1: params <- > 2: list(configuration = < > > This is how the start of the .R file produced from the vignette looks like. > > pa...

...markown as vignettes. But your suggestions to use quote and eval, as well as to use the package parameter in data made it work, with all devtools::install,check,build and build_vignettes as well as with R CMD ... etc. But most importantly it also still works with: rmarkdown::render("vignettes/tr_srm_summary.Rmd", params=list(configuration=skylineconfig, data=sample_analysis )) THANK YOU. This is how my vignette header looks (see below) and it works. --- title: "Titel" author: "WEW at FGCZ.ETHZ.CH" date: "`r Sys.Date()`" output: pdf_document: default html_do...

Hello, Thank you for the questions as well as remaining me of the default parameters in the yaml session. Indeed this seems to be the solution. But how would I assign package data as a default parameter? So originally I thought to render the markdown with : <code> data(sample_analysis) data(skylineconfig) x <- rmarkdown::render("report.Rmd", output_format =